View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15462_low_7 (Length: 299)
Name: NF15462_low_7
Description: NF15462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15462_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 2272504 - 2272789
Alignment:
| Q |
1 |
tcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272504 |
tcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctag |
2272603 |
T |
|
| Q |
101 |
gaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2272604 |
gaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatg |
2272703 |
T |
|
| Q |
201 |
ttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtgt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272704 |
ttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtgt |
2272789 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
29 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
103 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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