View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15462_low_8 (Length: 258)
Name: NF15462_low_8
Description: NF15462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15462_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 35373047 - 35373275
Alignment:
| Q |
17 |
caaatccactgttaacattgatgcttttggcttctgctttggattaatattcttctcagaatatcccaatgaaagtgaatttgttgaagtgttcctttta |
116 |
Q |
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| T |
35373047 |
caaatccactgttaacattgatgcctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagtgaatttgttgaagtgttcctttta |
35373146 |
T |
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| Q |
117 |
aatggacctaaccacttagcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataa |
216 |
Q |
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| T |
35373147 |
aatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataa |
35373246 |
T |
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| Q |
217 |
tcttgattatgttacttaatctctctgct |
245 |
Q |
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| T |
35373247 |
tcttgattatgttacttaatctctctgct |
35373275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 35364941 - 35365159
Alignment:
| Q |
27 |
gttaacattgatgcttttggcttctgctttggattaatattcttctcagaatatcccaatgaaagtgaatttgttgaagtgttccttttaaatggaccta |
126 |
Q |
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| T |
35364941 |
gttaacattgatgcctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagtgaatttgttgaagtgttccttttaaatggaccta |
35365040 |
T |
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| Q |
127 |
accacttagcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattat |
226 |
Q |
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| T |
35365041 |
accatttagcttgcatgtatttatgttttctccatggtcccatatgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattat |
35365140 |
T |
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| Q |
227 |
gttacttaatctctctgct |
245 |
Q |
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| T |
35365141 |
gttacttaatctctctgct |
35365159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 3776333 - 3776214
Alignment:
| Q |
70 |
tctcagaatatcccaatgaaagtgaatttgttgaagtgttccttttaaatggacctaaccacttagcttgcatgtatttatgttttctccatggtcccat |
169 |
Q |
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||||||||| ||||| || ||| | | |||||||||||||||||| | ||||||||||||| |||||||||||||| |||| || |||||||| ||||| |
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| T |
3776333 |
tctcagaatttcccattggaagaggagttgttgaagtgttcctttcacatggacctaaccatttagcttgcatgtacctatgcttcctccatggccccat |
3776234 |
T |
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| Q |
170 |
gtgcattttgttttccttca |
189 |
Q |
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| T |
3776233 |
gtgcatttttttatccttca |
3776214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 3808013 - 3807935
Alignment:
| Q |
96 |
tttgttgaagtgttccttttaaatggacctaaccacttagcttgcatgtatttatgttttctccatggtcccatgtgca |
174 |
Q |
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|||||||||| || ||||| | ||||||||||||| ||||||| |||||| ||||| | |||||||| ||||| |||| |
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| T |
3808013 |
tttgttgaagggtacctttcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgca |
3807935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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