View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_high_1 (Length: 764)
Name: NF15463_high_1
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 179 - 754
Target Start/End: Original strand, 13629929 - 13630508
Alignment:
| Q |
179 |
aactctaagttctaagataatcttgcttacaatttcggcaaaggcaccttatgatgttcttaacttcggcagggatgttcaatccaagttccagtttcca |
278 |
Q |
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| T |
13629929 |
aactctaagttctaagataatcttgcttacaatttcggcaaaggcaccttatgacgttcttaacttcggcagggatgttcaatccaagttccagtttcca |
13630028 |
T |
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| Q |
279 |
gaaacatgcaaagggatggtgctaccaagctctccattaaagttttgtacccagtgtttatattaataactcatctcacannnnnnnnncttttcaatgg |
378 |
Q |
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| T |
13630029 |
gaaacatgcaaagggatggtgctaccaagctatccattaaagttttgtgcccagtttttatattaataactcatctcacattttta-----tattaataa |
13630123 |
T |
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| Q |
379 |
taagatttataaacaattgagagacataagaga-agaaaaattgagaggattc--attcccacaattggcaagcaagttttactatgttgattcccttgt |
475 |
Q |
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| T |
13630124 |
-aagatttataaacaattgagagacataagagagagaaaaattgagaggattctcattcccacaattggcaagcaagttttactatgttgattcacttgt |
13630222 |
T |
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| Q |
476 |
tagatttcgacaaattatgtcaatatggcaatgcatagtctcaattattaagagttgcactatttgctcactgacagtttggcaatac---cctactaat |
572 |
Q |
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| T |
13630223 |
tagatttcgacaaattatgtcaatatggcaatacatagtctcaattattaagagttgcactatttgctcactgacaatttggcaatacacacctactaat |
13630322 |
T |
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| Q |
573 |
ctattcagttttacgctaaacacttct----ttcttttttgaccaaaacgctaaacacttcttttattatagcattttttgttgttgaaggaaacctgtt |
668 |
Q |
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| T |
13630323 |
ctattcagttttacgctaaacacttctttctttcttttttgaccaaaacgctaaacacttcttttattattgcattttttgttgttgaaggaaacctgtt |
13630422 |
T |
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| Q |
669 |
ttataagaaccagtcattgagttattaacattgatgtcatcgcaaacaaatgagctattcttttaaaacgcactggtgtacctttg |
754 |
Q |
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| T |
13630423 |
ttataagaaccaatcattgagttattaacattgatgtcatctcaaacaaatgagctattcttttaaaacgcactggtgtacctttg |
13630508 |
T |
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