View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_high_2 (Length: 632)
Name: NF15463_high_2
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 47386554 - 47386073
Alignment:
| Q |
18 |
atcactctaaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcgc----ttagt |
113 |
Q |
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| T |
47386554 |
atcactctaaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcaccgagtgagt |
47386455 |
T |
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| Q |
114 |
gtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagact |
208 |
Q |
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| T |
47386454 |
gtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagact |
47386355 |
T |
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| Q |
209 |
atagtttatgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaata |
297 |
Q |
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| T |
47386354 |
atagtttatgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaata |
47386255 |
T |
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| Q |
298 |
catatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcattt |
397 |
Q |
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| T |
47386254 |
catatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattcaccccaatttaaaaattctttgttttcattt |
47386155 |
T |
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| Q |
398 |
tcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaa |
479 |
Q |
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| T |
47386154 |
tcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaa |
47386073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 609
Target Start/End: Complemental strand, 47386013 - 47385943
Alignment:
| Q |
539 |
attacttcaccaaccatttcattttcatataattcttcttctttattttgtgtttgttcattttcatctat |
609 |
Q |
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| T |
47386013 |
attacttcaccaaccatttcattttcatataattcttcttctttattatgtggtttttcattttcatctat |
47385943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 222 - 413
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
222 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
320 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
321 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
413 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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