View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_10 (Length: 295)
Name: NF15463_low_10
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 42846704 - 42846426
Alignment:
| Q |
1 |
ctattgtagatttggctgcttgcccttccagttaaggagtattaacttgaattaatatatgttgaatggtattattcatcataagannnnnnnnnnnnnn |
100 |
Q |
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| T |
42846704 |
ctattgtagatttggctgcttgcccttccagttgaggagtattaacttgaattaatatatgttgaatggtattattcatcataagattttttgttttgtt |
42846605 |
T |
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| Q |
101 |
nnnggaacttgagtggaggtaaaaagtgttggaacttttctcgtgttagaaatgggaatgaaatggttactggttaggtttcttttgtacctcacaaaaa |
200 |
Q |
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| T |
42846604 |
tttggaacttgagtggaggtaaaaagtgttggaacttttctcgtgttagaaatgggaatgaaatggttactggttagatttcttttgtacctcacaaaaa |
42846505 |
T |
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| Q |
201 |
agctagtttttccttgagagagaaatattttcaacttgattactgttcaactttcttgagttcgtgcaacaaagatatt |
279 |
Q |
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| T |
42846504 |
agctagtttttccttgagagagaaatattttcaacttgattactgttcaactttcttgagttcgtgcaacaaagatatt |
42846426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 42825886 - 42825816
Alignment:
| Q |
145 |
gttagaaatgggaatgaaatggttactggttaggtttcttttgtacctcac-aaaaaagctagtttttccttgaga |
219 |
Q |
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| T |
42825886 |
gttagaaatggaaatgaaatggttactggtttg-----ttttgtacctcacgaaaaaagctagtttttccttgaga |
42825816 |
T |
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