View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_13 (Length: 238)
Name: NF15463_low_13
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 52982418 - 52982638
Alignment:
| Q |
18 |
caaaacatagcaaaagtgaacatagcaaggtgagagagagtttgtatgcacaaaatcgcagacagtagtattgttctcttgtatgcgaaacagagcataa |
117 |
Q |
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| T |
52982418 |
caaaacatagcaaaagtgaacatagcaaggtgagagagagtttgtatgcacaaagtcgcagactgtagtattgttctcttgtatgcgaaacagagcataa |
52982517 |
T |
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| Q |
118 |
cactacgtgatagagggagctcgtacgtatagaaatttggacagttaatccacaaataaataggattagtggctaataaataaacaaattgtcacagcta |
217 |
Q |
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| T |
52982518 |
cactacgtgatagagggagctcgtacgtatagaaatttggacagttaatccacaaataaataggattagtggctaataaataaacaaattgtcacagcta |
52982617 |
T |
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| Q |
218 |
atgaggtgtttaaaatgtgtt |
238 |
Q |
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| T |
52982618 |
atgaggtgtttaaaatgtgtt |
52982638 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 55663229 - 55663313
Alignment:
| Q |
52 |
agagagtttgtatgcacaaaatcgcagacagtagtattgttctcttgtatgcgaaacagagcataacactacgtgatagagggag |
136 |
Q |
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| T |
55663229 |
agagagtttgtatgcataaagtcacacacaatagtgatgtcctcttgtatccgaaacaaagcagaacactacgtgagagaaggag |
55663313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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