View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_3 (Length: 607)
Name: NF15463_low_3
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 4 - 591
Target Start/End: Complemental strand, 37718208 - 37717621
Alignment:
| Q |
4 |
gtagcagcacagagaatcttaaaaaatacttgggaatatggtatcacgatctggaaccacaaacagtggtttgggtagccaacagaaacaaccctattgt |
103 |
Q |
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| T |
37718208 |
gtagcaacaccgagaatcttaaaaaatacttgggaatatggtatcacgatctggaaccacaaacagtggtttgggtagccaacagaaacaaccctattgt |
37718109 |
T |
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| Q |
104 |
agattctaaaggagtttttcaaatcgcaaaggatggaaatatggtagtagcagatgcatcacaaagttactggtccacaaacttagaagcgtcctcatca |
203 |
Q |
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| T |
37718108 |
agattctaaaggagtttttcaaatcgcaaaggatggaaatatggtagtagcagatgcatcacaaagttactggtccacaaacttagaagcgtcctcgtca |
37718009 |
T |
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| Q |
204 |
agaaccagggtagtgaagctcttggattctggaaacctagtgcttatggatgatgatcatggttacttgtggcaaagcttccaacatccaacagatacat |
303 |
Q |
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| T |
37718008 |
agaaaaagggtagtgaagctcttggattctggaaacctagtgcttatggatgatgatcatggttacttgtggcaaagcttccaacatccaacagatacat |
37717909 |
T |
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| Q |
304 |
ttcttccaggtatgaaaatggacataaatttaactttgagttcttggaaaaatgagaacgatccaggaattggaagcttcgcctttcagaaggcacaaac |
403 |
Q |
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| T |
37717908 |
ttcttccaggtatgaaaatggacataaatttagctttgagttcttggaaaaatgagaacgatccaggaattggaagcttcgcctttcagaaggcacaaac |
37717809 |
T |
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| Q |
404 |
aggcgaccctcgaagctatagagtaaacaatcagtcacaactttattgggcatttgatggacacaattcagataagatgttcaacatcattcttgacttg |
503 |
Q |
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| T |
37717808 |
aggcgaccctcgaagctatagagtaaacaatcagtcacaactttattgggcatttgatggacacaattcagataagatgttcaacatcattcttgacttg |
37717709 |
T |
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| Q |
504 |
ttggagaactcgacctctaattcattgcacaagtatagagacataaccatcaaacaacgatcttttaattacgataaatcaaggttat |
591 |
Q |
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| T |
37717708 |
ttggagaactcgacctctaattcattgcacaagtatagagacataaccatcaaacaacgatcttttaattacgataaatcaaggttat |
37717621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 21933219 - 21933255
Alignment:
| Q |
289 |
atccaacagatacatttcttccaggtatgaaaatgga |
325 |
Q |
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| T |
21933219 |
atccaacagatacatttcttccaggtatgaaaatgga |
21933255 |
T |
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