View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_4 (Length: 524)
Name: NF15463_low_4
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 24893178 - 24893670
Alignment:
| Q |
1 |
tcgacgccgattacacacaaaacactcaaacccgcactttaaagggagaaaaaggggaggaataccacatcgaatagcagtgaatcacgcgtaggaaggt |
100 |
Q |
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| T |
24893178 |
tcgacgtcgattacacacaaaacactcaaacctgcactttaaagggagaaaaaggggaggaataccacatcgaatagcagtgaatcacgcgtaggaaggt |
24893277 |
T |
|
| Q |
101 |
aggaatcgaatcttcgagggcttcattttgatttctcttttgtgtgattcgtaatggtgggggaatgtgttgttgtggaaatgagagagaagtgaggaga |
200 |
Q |
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| T |
24893278 |
aggaatcgaatcgtcgagggcttcattttgatttctcttttgtgtgattcgtaatggtgggggaatgcgttgttgtggaaatga------------gaga |
24893365 |
T |
|
| Q |
201 |
aataagtgtttttgatttatgagaaaaagtggtgnnnnnnnnnnnnnnnnatgttttggttttcggaaataaactggaccggttgttttaatgcatacac |
300 |
Q |
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| T |
24893366 |
aataagtgtttttgatttatgagaaaaagtggtatatatatatatatataatgttttggttttcaaaaataaattggaccggttgttttaatgcatacac |
24893465 |
T |
|
| Q |
301 |
atagttgataaagttctattctaattctgataaacttgtaatcggtctcaaacatcttagaattgtctcattactnnnnnnnttactatacattctctaa |
400 |
Q |
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| T |
24893466 |
atagttgataaagttctattctaattctgataaacttgtaatcggtctcaaacatcttagaattgtctcattact-aaaaaattactatacattctctaa |
24893564 |
T |
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| Q |
401 |
tattttcttttaaaaaatttactcaactagcagctctaataccactaaatttccaaaaaacacctgaacgacaaataaatttcctaaatgaatattaagg |
500 |
Q |
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| T |
24893565 |
tattttcttttaaaaaatttactcaactagcagctctaataccactaaatttccaaaaaacacctgaacgacaaataaatttcctaaatgagtattaagg |
24893664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 31348022 - 31347950
Alignment:
| Q |
296 |
tacacatagttgataaagttctattctaattctgataaacttgtaatcggtctcaaacatcttagaattgtctc |
369 |
Q |
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|||||||| |||||||||||||| |||| || ||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
31348022 |
tacacataactgataaagttctat-ctaactcagatggacttctaatcggtcccaaacatcttagaattgtctc |
31347950 |
T |
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