View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15463_low_6 (Length: 422)

Name: NF15463_low_6
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15463_low_6
NF15463_low_6
[»] chr2 (5 HSPs)
chr2 (1-411)||(14486993-14487403)
chr2 (254-301)||(14167728-14167775)
chr2 (1-35)||(8192347-8192381)
chr2 (1-35)||(28194133-28194167)
chr2 (1-35)||(31175721-31175755)
[»] chr7 (5 HSPs)
chr7 (1-35)||(2344471-2344505)
chr7 (1-35)||(21574097-21574131)
chr7 (1-35)||(654700-654734)
chr7 (1-35)||(17279703-17279737)
chr7 (1-35)||(22696493-22696527)
[»] chr5 (3 HSPs)
chr5 (1-35)||(4603945-4603979)
chr5 (1-35)||(32059435-32059469)
chr5 (6-35)||(10612954-10612983)
[»] chr3 (2 HSPs)
chr3 (1-35)||(48977556-48977590)
chr3 (1-35)||(32094752-32094786)
[»] chr1 (5 HSPs)
chr1 (1-36)||(46607978-46608013)
chr1 (1-35)||(32729712-32729746)
chr1 (1-35)||(35138156-35138190)
chr1 (1-30)||(1486588-1486617)
chr1 (1-29)||(37351454-37351482)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-35)||(66922-66956)
[»] chr8 (6 HSPs)
chr8 (1-35)||(5740378-5740412)
chr8 (1-35)||(16990755-16990789)
chr8 (1-35)||(20306080-20306114)
chr8 (1-35)||(21092713-21092747)
chr8 (1-35)||(33747054-33747088)
chr8 (1-34)||(33534563-33534596)
[»] chr4 (1 HSPs)
chr4 (1-35)||(22488023-22488057)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 14486993 - 14487403
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaacnnnnnnnnttgaaattattttaaaaacctcgaccaagttatttgatttgttgtacttatctttt 100  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  14486993 agtcggtccttggatcggataccgagttttcaaaacaaaaaaaattgaaattattttaaaaacctcgaccaagttatttgatttgttgttcgtatctttt 14487092  T
Q  101 ttatgtttcgtactattccaaatggcactaaaacatatgaactcattattgcaggttgacacaatttcctcaggaaggcttgtgatttagaagtaattct 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14487093 gtatgtttcgtactattccaaatggcactaaaacatatgaactcattattgcaggttgacacaatttcctcaggaaggcttgtgatttagaagtaattct 14487192  T
Q  201 attgatttctaaatacttttcctttggttttattaacatcgatgttccaagggaagattttatgtagtttctgttactgatgtacaatgagattcaacat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14487193 attgatttctaaatacttttcctttggttttattaacatcgatgtttcaagggaagattttatgtagtttctgttactgatgtacaatgagattcaacat 14487292  T
Q  301 ttttgttgtcttgaaccaataaggttcattgttttgtttcatttttccatttagaagaatatcttatccacctcttagatgtaatttttctctttactgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  14487293 ttttgttgtcttgaaccaataaggttcattgttttgtttcatttttccatttagaagaatatcttatccacctcttagatgtactttttctcttttctgt 14487392  T
Q  401 ttaggagaata 411  Q
    |||||||||||    
T  14487393 ttaggagaata 14487403  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 14167775 - 14167728
Alignment:
Q  254 aagattttatgtagtttctgttactgatgtacaatgagattcaacatt 301  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  14167775 aagattttgtgtagtttctgttactgatgtacaatgagattcaacatt 14167728  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8192381 - 8192347
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8192381 agtcggtccttggatcggataccgagttttcaaaa 8192347  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28194167 - 28194133
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28194167 agtcggtccttggatcggataccgagttttcaaaa 28194133  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31175721 - 31175755
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  31175721 agtcggtccttggatcggataccgagttttaaaaa 31175755  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2344471 - 2344505
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2344471 agtcggtccttggatcggataccgagttttcaaaa 2344505  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21574131 - 21574097
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21574131 agtcggtccttggatcggataccgagttttcaaaa 21574097  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 654734 - 654700
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  654734 agtcggttcttggatcggataccgagttttcaaaa 654700  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17279703 - 17279737
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  17279703 agtcggtctttggatcggataccgagttttcaaaa 17279737  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22696493 - 22696527
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  22696493 agtcggtccttggatcggataccgagttttaaaaa 22696527  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4603945 - 4603979
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4603945 agtcggtccttggatcggataccgagttttcaaaa 4603979  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32059469 - 32059435
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32059469 agtcggtccttggatcggataccgagttttcaaaa 32059435  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 10612983 - 10612954
Alignment:
Q  6 gtccttggatcggataccgagttttcaaaa 35  Q
    ||||||||||||||||||||||||||||||    
T  10612983 gtccttggatcggataccgagttttcaaaa 10612954  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48977556 - 48977590
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48977556 agtcggtccttggatcggataccgagttttcaaaa 48977590  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32094786 - 32094752
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  32094786 agtcggttcttggatcggataccgagttttcaaaa 32094752  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46607978 - 46608013
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaac 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46607978 agtcggtccttggatcggatatcgagttttcaaaac 46608013  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32729712 - 32729746
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  32729712 agtcggtctttggatcggataccgagttttcaaaa 32729746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35138156 - 35138190
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  35138156 agtcggtccttggatcggataccgagttttaaaaa 35138190  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1486588 - 1486617
Alignment:
Q  1 agtcggtccttggatcggataccgagtttt 30  Q
    ||||||||||||||||||||||||||||||    
T  1486588 agtcggtccttggatcggataccgagtttt 1486617  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37351482 - 37351454
Alignment:
Q  1 agtcggtccttggatcggataccgagttt 29  Q
    |||||||||||||||||||||||||||||    
T  37351482 agtcggtccttggatcggataccgagttt 37351454  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 66922 - 66956
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  66922 agtcggtccttggatcggataccgagttttaaaaa 66956  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5740412 - 5740378
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  5740412 agtcggtccttggatcggacaccgagttttcaaaa 5740378  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16990755 - 16990789
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  16990755 agtcggtccttggatcggataccaagttttcaaaa 16990789  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20306080 - 20306114
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  20306080 agtcgatccttggatcggataccgagttttcaaaa 20306114  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21092713 - 21092747
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  21092713 agtcgatccttggatcggataccgagttttcaaaa 21092747  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33747054 - 33747088
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  33747054 agtcgatccttggatcggataccgagttttcaaaa 33747088  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33534596 - 33534563
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaa 34  Q
    |||||||||||||||||| |||||||||||||||    
T  33534596 agtcggtccttggatcggttaccgagttttcaaa 33534563  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22488057 - 22488023
Alignment:
Q  1 agtcggtccttggatcggataccgagttttcaaaa 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  22488057 agtcggtccttggatcggataccaagttttcaaaa 22488023  T

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