View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_7 (Length: 383)
Name: NF15463_low_7
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 37163272 - 37163624
Alignment:
| Q |
19 |
ccacatactcgcccttataatcatcaataagtcgacgtccatctgttgtcgcgttcaaatccaaaacattatctgccaaatctgaaatgacagcaagtgc |
118 |
Q |
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| T |
37163272 |
ccacatactcgcccttataatcatcaataagacgacgtccatctgttgtcgcgttcaaatccaaaacattatctgccaaatctgaaatgacagcaagtgc |
37163371 |
T |
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| Q |
119 |
attgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaagtttcttggtat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163372 |
attgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaagtttcttggtat |
37163471 |
T |
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| Q |
219 |
gtaattgcaccacttaaccaaacctttaaattcacaagaatgttttctaaattattgagatcaaannnnnnnattccctctattgacctatcaaattcgc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
37163472 |
gtaattgcaccacttaaccaaacctttaaattcacaagaatgttttctaaattattgagatcaaaattttttattccctctattgacctatcgaattcgc |
37163571 |
T |
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| Q |
319 |
caatagaaagatccattaattgcttgcatgtgtctagtgccatttttgccctt |
371 |
Q |
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| T |
37163572 |
caatagaaagatccattaattgcttgcatgtgtctagtgccatttttgccctt |
37163624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 46314825 - 46314705
Alignment:
| Q |
118 |
cattgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaagtttcttggta |
217 |
Q |
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||||||||||||||||||| |||||| |||| | |||||||| || | |||||| | ||||||||||||||| |||| ||||| ||||||||||| |
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| T |
46314825 |
cattgctactcatatgcatagaagtttgcaaaacctctttcatttttttaccagcatcggttgtagtattctcaaaagcatccaaacatgtttcttggta |
46314726 |
T |
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| Q |
218 |
tgtaattgcaccacttaacca |
238 |
Q |
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||| || ||||| |||||||| |
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| T |
46314725 |
tgtgatggcaccgcttaacca |
46314705 |
T |
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