View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_8 (Length: 382)
Name: NF15463_low_8
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 13853671 - 13854029
Alignment:
| Q |
11 |
aaacacatctccaacaacattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttga |
110 |
Q |
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| T |
13853671 |
aaacacatctccaacaacattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttga |
13853770 |
T |
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| Q |
111 |
acaggtgcaaaattaccagcaagccaatgatgacaaagtgaagaataataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactga |
210 |
Q |
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| T |
13853771 |
acaggtgcaaaattaccagcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttttccaacaagtcaacagcttttgaactga |
13853870 |
T |
|
| Q |
211 |
aacattttcttggttttggttccactttcacaatccctcgtctaagtgaaaatgatttgatctttacacaaattggtttgtgagaatggatagtagtagt |
310 |
Q |
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| T |
13853871 |
aacattttcttggttttggttccactttcacaatccctcgtctaagtgaaaatgatttgatctttacacaaatgggtttgtgagaatggatagtagtagt |
13853970 |
T |
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| Q |
311 |
gctaaacttgaagacttgggtaccacggtaacttctcaaggtgtttaacatgttactac |
369 |
Q |
| |
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| T |
13853971 |
gctaaacttgaagacttggctaccacggtaacttctcaaggtgtttaacatgttactac |
13854029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 51 - 369
Target Start/End: Original strand, 13895030 - 13895348
Alignment:
| Q |
51 |
tcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaagccaatgatgacaaagtg |
150 |
Q |
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| T |
13895030 |
tcacttaccggaaggtagcctttaacaggaaggtccttagtaggaggtgtctcatccttaacaggtgcaaaattaccggcaagccaatgatgaggaagtg |
13895129 |
T |
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| Q |
151 |
aagaataataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttccactttcacaatccctcg |
250 |
Q |
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| T |
13895130 |
atgaatcataaaacaacttcaccacaagcttctccaacaaatcaacagcttttgaactgaaacattttcttggttttggttccactttcacaatccctcg |
13895229 |
T |
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| Q |
251 |
tctaagtgaaaatgatttgatctttacacaaattggtttgtgagaatggatagtagtagtgctaaacttgaagacttgggtaccacggtaacttctcaag |
350 |
Q |
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| T |
13895230 |
tctaagtgaaaatgatttgatctttacacaaatgggtttgtgagaatggatagtagcagtgctaaacttgaagacttggctaccacggtaacttctcaag |
13895329 |
T |
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| Q |
351 |
gtgtttaacatgttactac |
369 |
Q |
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| T |
13895330 |
gtgtttaacctgctactac |
13895348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 369
Target Start/End: Original strand, 13872540 - 13872880
Alignment:
| Q |
29 |
attaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacca |
128 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
13872540 |
attatcaaaacaaccacttatgtcactaaccggaaggtgtcctttaacaggaagatcctttgtaggaggtgtctcatctttgacaggagcaaaattacca |
13872639 |
T |
|
| Q |
129 |
gcaagccaatgatgacaaagtgaagaataataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttg |
228 |
Q |
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| T |
13872640 |
gcaatccagtgatgagaaagtgaagaatcataaaagaacttcacaacaagattctccaacaaatcaacagcttttgaagtgaaacattttcttggttttg |
13872739 |
T |
|
| Q |
229 |
gttccactttcacaatccctcgtctaagtgaaaatgatttgatctttacacaaattggtttgtgagaatggatagtagtagtgctaaacttgaagacttg |
328 |
Q |
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||||||||||||||||||||| || | |||| |||||||||||||||||||| | || |||||||||||||||||||||||||| | ||||| ||||| |
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| T |
13872740 |
gttccactttcacaatccctcctccgattgaacatgatttgatctttacacaagtgggcttgtgagaatggatagtagtagtgctgatgttgaacacttg |
13872839 |
T |
|
| Q |
329 |
ggtaccacggtaacttctcaaggtgtttaacatgttactac |
369 |
Q |
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| T |
13872840 |
ggtaccacggtaacttctcaaggagtttaacctgctactac |
13872880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 13902778 - 13902993
Alignment:
| Q |
35 |
aaaacaaccaatta-tgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaag |
133 |
Q |
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| T |
13902778 |
aaaacaaccaattactatcactaaccggaaggtgtcctttaataggaagatccttaataggaggtgtttcatccttaacaggtgcaaaattaccagcaag |
13902877 |
T |
|
| Q |
134 |
ccaatgatgacaaagtgaagaataataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttcc |
233 |
Q |
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| T |
13902878 |
ccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattactgggttttggttcc |
13902977 |
T |
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| Q |
234 |
actttcacaatccctc |
249 |
Q |
| |
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||||||||||| |||| |
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| T |
13902978 |
actttcacaattcctc |
13902993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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