View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15463_low_9 (Length: 353)
Name: NF15463_low_9
Description: NF15463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15463_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1046430 - 1046272
Alignment:
| Q |
1 |
gtacttgtttctctaacttataaattgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaaaaattaataatatataaatatgggt |
100 |
Q |
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| T |
1046430 |
gtacttgtttctctaacttataaattgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaaaaattaataatatataaatatgggt |
1046331 |
T |
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| Q |
101 |
ggaccatggtacaccttatatgtgtccctgattacatat--atattagataaaagtaaa |
157 |
Q |
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| T |
1046330 |
ggaccatggtacaccttatatgtgtccctcattacatatatatattagataaaagtaaa |
1046272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 1045029 - 1044930
Alignment:
| Q |
237 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctctttattcttggtgaagcttacttc |
336 |
Q |
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| T |
1045029 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctgtttattcctggtgaagcttacttc |
1044930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 1045144 - 1045056
Alignment:
| Q |
152 |
agtaaatgactattaatcattgacggtgagaaatatgtagaaatcagcattagccattagctaatatnnnnnnnttaccaagtgttgtt |
240 |
Q |
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| T |
1045144 |
agtaaatgactattaatcattgacggtgagaacaatgtagaaatcagcattagccattagctaatataaaaaaattaccaagtgttgtt |
1045056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 1024240 - 1024314
Alignment:
| Q |
136 |
atatatattagataaaagtaaatgactattaatcattgacggtgagaaatatgtagaaatcagcattagccatta |
210 |
Q |
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| T |
1024240 |
atatatatcagacaaaagtaaatgaccattgatcattgagggtgagaacactgcagatattagcattagccatta |
1024314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 40641731 - 40641681
Alignment:
| Q |
133 |
tacatatatattagataaaagtaaatgactattaatcattgacggtgagaa |
183 |
Q |
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| T |
40641731 |
tacatatatattagataaaagtaaacgaccattgatcattgatggtgagaa |
40641681 |
T |
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