View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15464_high_7 (Length: 312)
Name: NF15464_high_7
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15464_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 88 - 294
Target Start/End: Complemental strand, 2373773 - 2373567
Alignment:
| Q |
88 |
tttctttttctaacaacttcttgtcttgttcttcccaccaacgatccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
187 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2373773 |
tttcttcttctaaaaacttcttgtcttcttcttcccaccaacgctccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
2373674 |
T |
|
| Q |
188 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2373673 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgagtctggg |
2373574 |
T |
|
| Q |
288 |
taaatca |
294 |
Q |
| |
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||||||| |
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| T |
2373573 |
taaatca |
2373567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 88 - 294
Target Start/End: Original strand, 2382298 - 2382504
Alignment:
| Q |
88 |
tttctttttctaacaacttcttgtcttgttcttcccaccaacgatccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
187 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382298 |
tttcttcttctaaaaacttcttgtcttcttcttcccaccaacgctccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
2382397 |
T |
|
| Q |
188 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2382398 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgagtctggg |
2382497 |
T |
|
| Q |
288 |
taaatca |
294 |
Q |
| |
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||||||| |
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|
| T |
2382498 |
taaatca |
2382504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 294
Target Start/End: Original strand, 2839534 - 2839740
Alignment:
| Q |
88 |
tttctttttctaacaacttcttgtcttgttcttcccaccaacgatccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
187 |
Q |
| |
|
|||||| ||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
2839534 |
tttcttcttcaaaaaacttcttgtcttcttcttcccaccaacgctccatctcagcacagaacttctcctcataatccttaaagatgatactcatgcgttg |
2839633 |
T |
|
| Q |
188 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
287 |
Q |
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||| |||| || ||||| | |||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839634 |
ttcatcaatttcggcagcacgtctcttcctaagaatttcaaaacggtcactttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
2839733 |
T |
|
| Q |
288 |
taaatca |
294 |
Q |
| |
|
||||||| |
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|
| T |
2839734 |
taaatca |
2839740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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