View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15464_high_8 (Length: 296)
Name: NF15464_high_8
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15464_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 44307201 - 44307006
Alignment:
| Q |
16 |
cctgtgtatggaaagagaagctatacttttgtggatgcagttcgtagcattcttggtaacttatattgacttgcacgtacccatgctcttaaatacaagc |
115 |
Q |
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| T |
44307201 |
cctgtgtatggaaagagaagctatacttttgtggatgcagttcgtagcattcttggtaacttatattgacttgcac----ccatgctcttaaatacaagc |
44307106 |
T |
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| Q |
116 |
aaaaagtcaaatgtattttgtttcaaatgtagaacaaaatgtgtttgtataattaagatcggaatgagtattataaaacatcaatgtcatgtcacaacat |
215 |
Q |
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| T |
44307105 |
aaaaagtcaagtgtattttgtttcaaatgtagaacaaaatgtgtttgtataattaagatcggaatgagtattataaaacatcaatgtcatgtcacaacat |
44307006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 44306971 - 44306907
Alignment:
| Q |
214 |
atgcaatgcatgtatctaaaacaacattatagtttcaaacgtaatttgcaggcgggcgccaatac |
278 |
Q |
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| T |
44306971 |
atgcaatgcatgtatctaaaacaacattatagtttcaaacgtaatttgcaggcgggcgccaatac |
44306907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 44324834 - 44324784
Alignment:
| Q |
24 |
tggaaagagaagctatacttttgtggatgcagttcgtagcattcttggtaa |
74 |
Q |
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| T |
44324834 |
tggaaagagaaactatactttcatggatgcagttagtaacattcttggtaa |
44324784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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