View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15464_low_2 (Length: 504)
Name: NF15464_low_2
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15464_low_2 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 24830764 - 24831251
Alignment:
| Q |
8 |
catcatcatgaaaaacaattaaccctcttaaaaaccttaatcaccttacacagatgcttacaacataaaattaaccagaagcctcaaaatcgcggtgcaa |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24830764 |
catcatcatgaaaaacaaataaccctcttaaaaaccttaatcaccttacac-------tacaacataaaactaaccagaagcctcaaaatcgcggtgcaa |
24830856 |
T |
|
| Q |
108 |
tcggaaaccttaattaaacatttttgtctttccaatcaaccatcatcaacattcttgacactatttactgcataatatttgcttctaccctcagaaataa |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24830857 |
tcgggaaccttaattaaacatttttgtctttccaatcaaccattatcaacattcttgacactatttactgcataatatttgcttctgccctcagaaataa |
24830956 |
T |
|
| Q |
208 |
caatgactaagtcgtcacacaaatgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagagacatccaattcgtatcatataga |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24830957 |
caaggactaagtcgtcacacaaatgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagagacatccaattcgtatcatataga |
24831056 |
T |
|
| Q |
308 |
tccatggaatgaagctgagccttaccctttctactagcgaatcggaacaaccattgaatgagagacaattttttcccccacagctgtatctgtatcatat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24831057 |
tccatggaatgaagctgagccttaccctttctactagcgaatcggaacaaccattgaatgagagacaatttttttccccacagctgtatctgtatcatat |
24831156 |
T |
|
| Q |
408 |
gacatttgattttttcattgtcatgtccattggaagattcttcattaaatnnnnnnnnnnncttgcatcaaacatgtccaacaaaataataagtggc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24831157 |
gacatttgattttttcattgtcatgtccattggaagattcttcattaaat--aaaaaaaaacttgcatcaaacatgtccaacaaaataataagtggc |
24831251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 814968 - 815036
Alignment:
| Q |
305 |
agatccatggaatgaagctgagccttaccctttctactagcgaatcggaacaaccattgaatgagagac |
373 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
814968 |
agatccatgaaatgaaggtgagccttaccgtttctactagcgaatctgcacaaccattgaatgggagac |
815036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 504
Target Start/End: Original strand, 16947403 - 16947434
Alignment:
| Q |
473 |
catcaaacatgtccaacaaaataataagtggc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16947403 |
catcaaacatgtccaacaaaataataagtggc |
16947434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University