View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15464_low_3 (Length: 467)

Name: NF15464_low_3
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15464_low_3
NF15464_low_3
[»] chr4 (3 HSPs)
chr4 (18-450)||(1006837-1007271)
chr4 (15-119)||(16866241-16866345)
chr4 (360-428)||(32916566-32916634)
[»] chr3 (3 HSPs)
chr3 (15-115)||(20545210-20545310)
chr3 (324-428)||(41251201-41251307)
chr3 (29-92)||(42971685-42971748)
[»] chr8 (5 HSPs)
chr8 (15-115)||(40610007-40610107)
chr8 (20-119)||(27888009-27888108)
chr8 (20-119)||(27946667-27946766)
chr8 (20-119)||(28026910-28027009)
chr8 (361-404)||(7248506-7248549)
[»] chr2 (2 HSPs)
chr2 (319-439)||(15766217-15766339)
chr2 (344-385)||(36052371-36052414)
[»] chr1 (2 HSPs)
chr1 (15-119)||(47144527-47144631)
chr1 (362-420)||(16516030-16516088)
[»] chr6 (2 HSPs)
chr6 (344-428)||(5894251-5894337)
chr6 (20-119)||(5144250-5144349)
[»] scaffold0527 (2 HSPs)
scaffold0527 (302-408)||(2177-2285)
scaffold0527 (302-408)||(10240-10348)
[»] chr5 (1 HSPs)
chr5 (347-423)||(25034569-25034647)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 1007271 - 1006837
Alignment:
Q  18 aacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaa 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1007271 aacatgaagctgctgcaacatattctgcttcagtagtgaagagagtaactataggttgctttttagatgaccaagctattgcactatcaccaatcatgaa 1007172  T
Q  118 cattgaagtatattgtaaaacgacataaaatttaaaacaagtttt-atcaaaacgacataatttgagacggagggagtaataaacatgtttagaattccg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  1007171 cattgaagtatattgtaaaacgacataaaatttaaaacaagtttttatcaaaacgacataatttgagacggaggaagtaataaacatatttagaattccg 1007072  T
Q  217 tgaacagcatnnnnnnn-caaggtgatatggctatacacaaaaatgagtgttaaatgcggaatgcaaaagcagggaatatattgtctctctcgtgaaaac 315  Q
    |||||| |||        |||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  1007071 tgaacaacataaaaaaaacaaggtgacatggctatacacaaaaacgagtgttaaatgcggagtgcaagagcagggaatatatcatctctctcgtgaaaac 1006972  T
Q  316 atgtgcagttttctccggtgtcaaattcaagtcattaaacatcatctctcttgattttaacatttaatttttcaaatacatttatttttcaatagataga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1006971 atgtgcagttttctccggtgtcaaattcaagtcattaaacatcatctctcttgattttaacatttaatttttcaaatacatttatttttcaatagataga 1006872  T
Q  416 atttcactagaccttccgatcactaaagaggatta 450  Q
    |||||||||||||||||||||||||||||||||||    
T  1006871 atttcactagaccttccgatcactaaagaggatta 1006837  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 16866345 - 16866241
Alignment:
Q  15 atgaacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcat 114  Q
    ||||||||||||||||||||||||||||  |||||||||| || |||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||    
T  16866345 atgaacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggccaggctattgcactatcaccaatcat 16866246  T
Q  115 gaaca 119  Q
    |||||    
T  16866245 gaaca 16866241  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 32916566 - 32916634
Alignment:
Q  360 tctctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttcactagacc 428  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||| |||| |||||||||||||||||    
T  32916566 tctctcttaattttaatatttaatttctcaaatgcatttatttttcgataggtagaatttcactagacc 32916634  T

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Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 20545310 - 20545210
Alignment:
Q  15 atgaacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  20545310 atgaacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgctttttagatgaccaagctattgtactatcacaaatcat 20545211  T
Q  115 g 115  Q
    |    
T  20545210 g 20545210  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 428
Target Start/End: Complemental strand, 41251307 - 41251201
Alignment:
Q  324 ttttctccggtgtcaaattcaagtcattaaacatcatctctct--tgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttca 421  Q
    ||||| ||| ||||||||  || |||||||||||  |||||||  |||||||||||||||| || | ||||| |||||||||||||| | ||| |||||     
T  41251307 ttttcaccgatgtcaaatctaaatcattaaacattttctctctcatgattttaacatttaacttcttaaataaatttatttttcaatgggtaggatttcc 41251208  T
Q  422 ctagacc 428  Q
    |||||||    
T  41251207 ctagacc 41251201  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 42971748 - 42971685
Alignment:
Q  29 gctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaag 92  Q
    ||||| ||| ||||||||||||||||||| ||||| || |||| |||  |||||||||||||||    
T  42971748 gctgctacaaattctgcttcagtagtggacagagttacaatagcttgttttttagatgaccaag 42971685  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 40610007 - 40610107
Alignment:
Q  15 atgaacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcat 114  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||    
T  40610007 atgaacatgaagttgctgcaacatattatgcttcagtagtggagagagtaactatagattgttttttagatgaccaagttattgcactatcaccaatcat 40610106  T
Q  115 g 115  Q
    |    
T  40610107 g 40610107  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 27888009 - 27888108
Alignment:
Q  20 catgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca 119  Q
    ||||| |||||||||||||  || |||||| | |||||  ||||||||||||| ||| |||| |||||||||| |||||||| ||| |||||||| ||||    
T  27888009 catgacgctgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca 27888108  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 27946667 - 27946766
Alignment:
Q  20 catgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca 119  Q
    ||||| |||||||||||||  || |||||| | |||||  ||||||||||||| ||| |||| |||||||||| |||||||| ||| |||||||| ||||    
T  27946667 catgacgctgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca 27946766  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 28026910 - 28027009
Alignment:
Q  20 catgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca 119  Q
    ||||| |||||||||||||  || |||||| | |||||  ||||||||||||| ||| |||| |||||||||| |||||||| ||| |||||||| ||||    
T  28026910 catgacgctgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca 28027009  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 7248506 - 7248549
Alignment:
Q  361 ctctcttgattttaacatttaatttttcaaatacatttattttt 404  Q
    |||||| |||||||||||||||||| |||||| |||||||||||    
T  7248506 ctctctggattttaacatttaatttctcaaatgcatttattttt 7248549  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 439
Target Start/End: Complemental strand, 15766339 - 15766217
Alignment:
Q  319 tgcagttttctccggtgtcaaattcaagtcattaaacatcatctctct--tgattttaacatttaatttttcaaatacatttatttttcaatagatagaa 416  Q
    |||||||||||| |||| |||||  ||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||  |    
T  15766339 tgcagttttctcgggtgccaaatctaagtcattaaacatcttctctctcctgattttaacatttaatttctcaaatacatttatttttcaatggataaga 15766240  T
Q  417 tttcactagaccttccgatcact 439  Q
    ||||| | |||| ||| ||||||    
T  15766239 tttcattggaccgtccaatcact 15766217  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 36052414 - 36052371
Alignment:
Q  344 aagtcattaaacatc--atctctcttgattttaacatttaattt 385  Q
    ||||||| |||||||  |||||||||||||||||||||||||||    
T  36052414 aagtcatcaaacatcttatctctcttgattttaacatttaattt 36052371  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 47144631 - 47144527
Alignment:
Q  15 atgaacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcat 114  Q
    |||| |||||||||||||| | ||| |||||||||||||| || |||||||||||||| ||| ||||||||||||| |||||||| | |||||||| |||    
T  47144631 atgagcatgaagctgctgctaaatactctgcttcagtagtagaaagagtaactataggctgctttttagatgaccaggctattgctccatcaccaaccat 47144532  T
Q  115 gaaca 119  Q
     ||||    
T  47144531 aaaca 47144527  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 16516088 - 16516030
Alignment:
Q  362 tctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttc 420  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  16516088 tctcttgattgtaacatttaatttttcaaatgtatttatttttcaatggataggatttc 16516030  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 5894337 - 5894251
Alignment:
Q  344 aagtcattaaacatcatctctct--tgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttcactagacc 428  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| |||||| ||||||||||||||  | |||||||| ||||||||    
T  5894337 aagtcattaaacatcttctctctcttgattttaacatttaatttatcaaatgcatttatttttcaacgggtagaattttactagacc 5894251  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 5144250 - 5144349
Alignment:
Q  20 catgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca 119  Q
    ||||||||| |||||||||| ||  | ||||| ||||| |||||||||||||| ||| | ||||||||| |||||||||||| ||| || ||||| ||||    
T  5144250 catgaagctactgcaacatactcaacctcagtggtggaaagagtaactataggctgcttcttagatgacaaagctattgcaccatccccgatcataaaca 5144349  T

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Target: scaffold0527 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 2285 - 2177
Alignment:
Q  302 tctctcgtgaaaacatgtgcagttttctccggtgtcaaattcaagtcattaaacatc--atctctcttgattttaacatttaatttttcaaatacattta 399  Q
    ||||| |||| || || ||||||||| | | ||| |||||  |||||||||||| ||  || |||||||||||||||||||||||| |||||| ||||||    
T  2285 tctcttgtgagaatatctgcagtttttttcagtgccaaatctaagtcattaaacctcttatttctcttgattttaacatttaatttctcaaatgcattta 2186  T
Q  400 tttttcaat 408  Q
    |||||||||    
T  2185 tttttcaat 2177  T

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Target: scaffold0527; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 10348 - 10240
Alignment:
Q  302 tctctcgtgaaaacatgtgcagttttctccggtgtcaaattcaagtcattaaacatc--atctctcttgattttaacatttaatttttcaaatacattta 399  Q
    ||||| |||| || || ||||||||| | | ||| |||||  |||||||||||| ||  || |||||||||||||||||||||||| |||||| ||||||    
T  10348 tctcttgtgagaatatctgcagtttttttcagtgccaaatctaagtcattaaacctcttatttctcttgattttaacatttaatttctcaaatgcattta 10249  T
Q  400 tttttcaat 408  Q
    |||||||||    
T  10248 tttttcaat 10240  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 25034647 - 25034569
Alignment:
Q  347 tcattaaacatc--atctctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttcact 423  Q
    ||||||||||||   |||||||||||||||||||||||||| || ||| || |||||||||||| | ||| ||||||||    
T  25034647 tcattaaacatcttctctctcttgattttaacatttaatttctcgaatgcacttatttttcaattggtaggatttcact 25034569  T

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