View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15464_low_4 (Length: 446)
Name: NF15464_low_4
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15464_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 1095827 - 1095390
Alignment:
| Q |
1 |
catagtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaaatcccaacccctctttataataacatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1095827 |
catagtagctggaactgaaacaatgaaaacaaatatatacgaaggagaagctcagcataatttcaggtcaaaatcccaacccctttttataataacatac |
1095728 |
T |
|
| Q |
101 |
acatcttccaaatactccaatatatccctgcaacctaagtaaaatcaaaagaaaacaatttatcaaaagataa------aagattcacaacatcaatctt |
194 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1095727 |
acatctttcaaatactccaatatgtccctgcaacctaagtaaaatcaaaagaaaacaatttatcaaaagaaaacaattcaagattcacaacatcaatctt |
1095628 |
T |
|
| Q |
195 |
gaatgtcatatcatgatcataatcgacactgatcgtcaacttccttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataa |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1095627 |
gaatgtcatctcatgatcataatcgacactgatcgtcaactttcttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataa |
1095528 |
T |
|
| Q |
295 |
cacaattctaactcttgtaaattagggcacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaactatttccttcaggcagg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1095527 |
cacaattctaactcttgtaaattagggcacccagaaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaactatttccttcaggcagg |
1095428 |
T |
|
| Q |
395 |
aaaatgaataccactaggaatatttagagtgaacttga |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
1095427 |
aaaatgaataccactaggaatatttagagtgaacttga |
1095390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 9891438 - 9891605
Alignment:
| Q |
6 |
tagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaaatcccaacccctctttataataacatacacatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9891438 |
tagctggaactgaaacaatgaaaacaaatatatacgaacgagcagctcagcataatttcaggtcaaaatcccaacccctctctataataacatacacatc |
9891537 |
T |
|
| Q |
106 |
ttccaaatactccaatatatccctgcaacctaagtaaaatc-aaaagaaaacaatttatcaaaagata |
172 |
Q |
| |
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|||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
9891538 |
ttccaaatactccaatatgtccccacaaccaaagtaaaatcaaaaagaaaacaatttatcaaaagata |
9891605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31237009 - 31237136
Alignment:
| Q |
1 |
catagtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaaatcccaacccctctttataataacatac |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
31237009 |
catagtagctgggactgaaacaatgaaaacaaatatatacgaatgagtacctcagcataatttcaggtcaaaatcccaacccctatctataataacatac |
31237108 |
T |
|
| Q |
101 |
acatcttccaaatactccaatatatccc |
128 |
Q |
| |
|
||||||||||||||||| ||||| |||| |
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|
| T |
31237109 |
acatcttccaaatactcaaatatgtccc |
31237136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31253628 - 31253742
Alignment:
| Q |
1 |
catagtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttca-ggtcaaaatccca-acccctctttataataacat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||| |||||| |||||| |||||| ||||| || |||||||||| |
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| T |
31253628 |
catagtagctggaactgaaacaatgaaaacaattatatatgaatgagcagctcagcataatttcagggtcaagatcccagaccccactctataataacaa |
31253727 |
T |
|
| Q |
99 |
acacatcttccaaat |
113 |
Q |
| |
|
||||||||||||||| |
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|
| T |
31253728 |
acacatcttccaaat |
31253742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 31268552 - 31268698
Alignment:
| Q |
230 |
tcaacttccttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataacacaattctaactcttgtaaattagggcacccata |
329 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||| |||| || |||| ||||||||||| || ||||||| | |
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|
| T |
31268552 |
tcaacttccgtaatgtggaaattgcaacactgatctgctttatgttctcccaataa---caattgtaccattccaactcttgtaagacagagcacccaga |
31268648 |
T |
|
| Q |
330 |
aaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
379 |
Q |
| |
|
|||||| |||||| || |||||||| | ||| ||||||||||||||| |
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|
| T |
31268649 |
gaaaagtcattgaactgacttctcattagcaaacataacatctgaaacta |
31268698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 31255900 - 31255957
Alignment:
| Q |
322 |
cacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
379 |
Q |
| |
|
|||||| ||||||| ||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
31255900 |
cacccagaaaaaagacgttgaactgacttctcatttgcaaaggtaacatctgaaacta |
31255957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 31239385 - 31239460
Alignment:
| Q |
304 |
aactcttgtaaattagggcacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
379 |
Q |
| |
|
||||||||||| || ||| ||| |||||||| |||||| || |||||||||| |||||||||||||||||||| |
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|
| T |
31239385 |
aactcttgtaagacagagcatccagaaaaaagtcgttgaaatgacttctcatttgcaaaggtaacatctgaaacta |
31239460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 379
Target Start/End: Complemental strand, 16131214 - 16131060
Alignment:
| Q |
222 |
actgatcgtcaacttccttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataacacaattctaactcttgtaaattaggg |
321 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| | ||| ||||| ||||| | |||||||||| |||| | ||| || ||||||||||| |||| |
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|
| T |
16131214 |
actgatggtcaacttccttaatgtggaaattgagagactaatctggtttatgtgctcccaataa---caattatccaactccaactcttgtaagacaggg |
16131118 |
T |
|
| Q |
322 |
cacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
379 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||| ||||||||||| || ||||| |
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|
| T |
16131117 |
cacccagagaaaagttgttgagccgagttctcatttgcaaaggtaacatttgtaacta |
16131060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 16131285 - 16131233
Alignment:
| Q |
166 |
aaagataaaagattcacaacatcaatcttgaatgtcatatcatgatcataatc |
218 |
Q |
| |
|
||||||| |||||||||| |||||||||||| | ||||| |||||||||||| |
|
|
| T |
16131285 |
aaagatagaagattcacagcatcaatcttgagtttcataatatgatcataatc |
16131233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 442446 - 442341
Alignment:
| Q |
1 |
catagtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaa-atcccaa-cccctctttataataacat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||| ||||||| ||||||| |||||||||| |
|
|
| T |
442446 |
catagtagctggaactgaaacaatgaaaagaaatt---------gagaagctcagcataatttcagggcaaagatcccaaacccctctctataataacac |
442356 |
T |
|
| Q |
99 |
acacatcttccaaat |
113 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
442355 |
acatatcttccaaat |
442341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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