View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15464_low_5 (Length: 421)
Name: NF15464_low_5
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15464_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 24831248 - 24831650
Alignment:
| Q |
1 |
tggctacacttttatgatatgaacataaagttccatagaagcaagcaagcaattgtaccaccaatgccaagataggttgcaaattattcctttctgtttc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24831248 |
tggctacgcttttatgatatgaacataaagttccatagaagcaagcaagcaattgtaccaccaatgccaagataggttgcaaattattcctttctgtttc |
24831347 |
T |
|
| Q |
101 |
actcaatctgttaaaatgttgaagattaccaccattagttactccgatcctctcatttggaagtggtagttgatcaggccttcatttaagggctggaata |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24831348 |
actcaatctgttaaaatgttgaagattaccaccgttagttactccgatcctctcatttggaagtggtagttgatcaggccttcatttaagggctggaata |
24831447 |
T |
|
| Q |
201 |
aaagctaggcttctcaataacagtagaagctcactccaaatcattgacaatttaatgttaacctcaggaaacaaaacaaaatgcagattatacaaaacat |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24831448 |
aaagctaggcttctcaataatagtagaagctcactccaaatcattgacaatttattgttaacctcaggaaacaaaacaaaatgcagatcatacaaaacat |
24831547 |
T |
|
| Q |
301 |
aagtgaataagatgaaatggaaaggnnnnnnnggatgaaagacgaattaatccttccttgtgtgagaaactaacggggaggtagaaattaaaatgggaaa |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24831548 |
aagtgaataagatgaaatggaaaggaaaaaaaggatgaaagacgaattaatccttccttgtgtgagaaactaacggggaggtggaaattaaaatgggaaa |
24831647 |
T |
|
| Q |
401 |
aaa |
403 |
Q |
| |
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||| |
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| T |
24831648 |
aaa |
24831650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 319
Target Start/End: Original strand, 16947548 - 16947720
Alignment:
| Q |
151 |
tctcatttggaagtggtagttgatcaggccttcattt-aagggctggaataaaagctaggcttctcaataacagtagaagctcactccaaatcattgaca |
249 |
Q |
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|||||||| ||||| ||||||||| | | ||||||| |||||||||||| |||||||||||||||||||| |||||||| ||| | |||| ||| | | |
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| T |
16947548 |
tctcattttgaagtagtagttgatttgactttcattttaagggctggaatcaaagctaggcttctcaataatagtagaaggtcatttcaaactattaata |
16947647 |
T |
|
| Q |
250 |
atttaatgttaacct-caggaaac--aaaacaaaatgcagattatacaaaacataagtgaataagatgaaatg |
319 |
Q |
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|||||||| |||| |||||||| |||| ||||||||| ||||||||||| | ||||||||||||||| |
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| T |
16947648 |
gtttaatgtagacctccaggaaacaaaaaaaaaaatgcaggccatacaaaacatgtgcgaataagatgaaatg |
16947720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 16947444 - 16947478
Alignment:
| Q |
14 |
atgatatgaacataaagttccatagaagcaagcaa |
48 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
16947444 |
atgatatgaacataaagttctatagaagcaagcaa |
16947478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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