View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15464_low_7 (Length: 335)
Name: NF15464_low_7
Description: NF15464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15464_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 47893422 - 47893604
Alignment:
| Q |
132 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatgcatag---cat--tgatatt |
226 |
Q |
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| T |
47893422 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatacataggcacatgatattatt |
47893521 |
T |
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| Q |
227 |
catttctttctatatatagctagctagctacacgagtcacactgcaatcaattactcctctcactcactcatacaccattccttaat |
313 |
Q |
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| T |
47893522 |
catttctttctatata----tagctagctacacgagtcacactgcaatcaattactcctctcagtcactcatacaccattccttaat |
47893604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 47893258 - 47893378
Alignment:
| Q |
13 |
atgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgataa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47893258 |
atgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgataa |
47893357 |
T |
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| Q |
113 |
gtttggcatttgcatttttag |
133 |
Q |
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| T |
47893358 |
gtttggcatttgcatttttag |
47893378 |
T |
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