View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_106 (Length: 203)
Name: NF15465_high_106
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_106 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25013663 - 25013874
Alignment:
| Q |
1 |
tatatacaaatttcctacaatgggccaaaatcattattcatgtcctgttacataagttaatctattattttccctataatttggtttagggtattgcggc |
100 |
Q |
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| T |
25013663 |
tatatacaaatttcctacaatgggacaaaatcattattcatgtcatgttacataagttaatatattattttccctataatttggtttagggtattgcggc |
25013762 |
T |
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| Q |
101 |
ctgcagattcaataaaatccagattgg---------nnnnnnnnnatattttaaaatgttgttaggtaaataaaatgcaacaacactttgattaagatag |
191 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25013763 |
ctgcagattcaataaaatccagattggttttttttttttttatttatattttaaaatgttgttaggtaaataaaatgcaacaacactttgattaagatag |
25013862 |
T |
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| Q |
192 |
aagttataccct |
203 |
Q |
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|||||||||||| |
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| T |
25013863 |
aagttataccct |
25013874 |
T |
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