View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_17 (Length: 558)
Name: NF15465_high_17
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Complemental strand, 45657645 - 45657108
Alignment:
| Q |
20 |
gttagagttgaaatgaaattggtaaaaacaagtgataaaattgatattgaaagacggtgtcgtttttccactccttatccatttcggca----------- |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45657645 |
gttagagttgaaatgaaattggtaaaaacaagtggtaaaattgatattcaaagacggtgtcgtttttccactccttatccatttcggcagcatagcagca |
45657546 |
T |
|
| Q |
109 |
attgagaagagagtaactgagatgctctgaa------------tctaatggcgctactacgtactactcttccatgtccaactcaattatcctccaaaaa |
196 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45657545 |
attgagaagagagtaactgagatgctctgaaactgtgagtgaatctaatggcaatactacgtactactcttccatgtccaactcaattatcctccacaaa |
45657446 |
T |
|
| Q |
197 |
acaccatgtaataataacaaactctttcgactttgacaagaagaaacattattcccctaatcctttcttttcttcttctcttcgtttatctgttactcat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45657445 |
acaccatgtaataataacaaactctttcgactttgacaagaagaaacattattcccctgatcctttcttttcttcttctcttcgtttatctgttactcat |
45657346 |
T |
|
| Q |
297 |
accccaacccttattatcacaaccaaacaacacttttattctactctcagattcgcctctacttccgaacaacaagtaaccacccaggaacaaacggaag |
396 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45657345 |
accccaacccttattatcacaaccaaacaacactttaattctactctcagattcgcctctacttccgaacaacaagtaaccacccaggaacaaacggaag |
45657246 |
T |
|
| Q |
397 |
agttgtctactaccaggttacttgctcagaatgttccatggtcaagtaccaccgaagatgttcgttctttgtttgaaaaatatggaaaagtcctccatgt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45657245 |
agttgtctactaccaggttacttgctcagaatgttccatggtcaagtaccaccgaagatgttcgttctttgtttgaaaaatatggaaaagtcctccatgt |
45657146 |
T |
|
| Q |
497 |
tgaggttttttaatcttctactctgtcttattatgttc |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45657145 |
tgaggttttttaatcttctactctgtcttattatgttc |
45657108 |
T |
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