View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_18 (Length: 540)
Name: NF15465_high_18
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 16758668 - 16758990
Alignment:
| Q |
18 |
gaattggccgtaaatttagtagagttacactgtgctagtgtgatactgtaattttgataaaagctgcactttaaaacttaacaaaatcattattttctaa |
117 |
Q |
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| T |
16758668 |
gaattggccgtaaatttagtagagttacactgtgctagtgtgatactgtaattttgataaaagctgcactttaaaacttaacaaaatcattatt--ctaa |
16758765 |
T |
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| Q |
118 |
acttacactacgaagtgttgtggaaacaaaaaagcattgtagtgaatttgtctcggttacactgagctaatattttacattatgctccacataacaaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
16758766 |
acttacactacgaagtgttgtggaaacaaaaaagcattgtagtgaatttgtctcggttacac-gagcaaatattatacattatgctccacataacaaact |
16758864 |
T |
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| Q |
218 |
atagcattttaattgcttctttaataatatatttaatccatgtatgatgtatatttatttcacgacaatcttttcctaacaaacttgtgcatttcagtga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16758865 |
atagcattttaattgcttctttaataatatatttaatccatgtatgatgtatatttatttcacgacaatcttttcctaacaaacttgtgcatttcagtga |
16758964 |
T |
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| Q |
318 |
aaccaaatgcttgtcttgcctaaact |
343 |
Q |
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| T |
16758965 |
aaccaaatgcttgtcttgcctaaact |
16758990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 419 - 532
Target Start/End: Original strand, 16759071 - 16759184
Alignment:
| Q |
419 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaaactcaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16759071 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
16759170 |
T |
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| Q |
519 |
gtagaacatagtat |
532 |
Q |
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|||||||||||||| |
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| T |
16759171 |
gtagaacatagtat |
16759184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 16753641 - 16753798
Alignment:
| Q |
18 |
gaattggccgtaaatttagtagagttacactgtgctagtgtgatactgtaattttgataaaagctgcactttaaaacttaacaaaatcattattttctaa |
117 |
Q |
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||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| | || |
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| T |
16753641 |
gaattgggtgtaaatttagtagaattacactgtgctagtt--atactgcaattttgataaaagctgcactttaaaacttaa---aatcattatttcc-aa |
16753734 |
T |
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| Q |
118 |
acttacactacgaagtgttgtggaaacaaaaaagcattgtagtgaatt--tgtctcggttacac |
179 |
Q |
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| T |
16753735 |
acttacactaggaagtgttgtggaaacaaaaaagcattgtagtgaatttgtgtctcggttacac |
16753798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 532
Target Start/End: Original strand, 16753829 - 16753938
Alignment:
| Q |
419 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaaactcaa |
518 |
Q |
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||||||||||||||||| || ||||||||||| ||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
16753829 |
ttatcttccatccatct-tgtttgagagtgta-acttgtgaattcacatatagcaaacttcatttctct--cacttgttaaaaagatttgttaagctcaa |
16753924 |
T |
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| Q |
519 |
gtagaacatagtat |
532 |
Q |
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| ||| |||||||| |
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| T |
16753925 |
gaagatcatagtat |
16753938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 16759020 - 16759053
Alignment:
| Q |
367 |
ttgtgctactgcaaactttatttctcttctgcct |
400 |
Q |
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| T |
16759020 |
ttgtgctactgcaaactttatttctcttctgcct |
16759053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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