View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_high_2 (Length: 839)
Name: NF15465_high_2
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 811
Target Start/End: Original strand, 14288535 - 14289364
Alignment:
| Q |
1 |
tcatctccgacacaaaagacaaagttccgtagagataatttggttaatgctggcatatttagagaatttgggaataaagtgacatcatgacggttaggac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
14288535 |
tcatctccgacacaaaagacaaagttccgtagagataatttggttaatgctggcatatttagagaatttgggaataaagtgatatcatcacgattaggac |
14288634 |
T |
|
| Q |
101 |
gacaaacagaaagatgaagatgtgttaaaagttgagatgaaaataagcagcgtggtaaatgttgaacatcacataagaggttgatttctattctaattgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
14288635 |
gacaaacagaaagatgaagatgtgttaaaagttgagatgaaaataagcagcgtggtaaatgttgaacatcacataagagattgat-----ttctaattgc |
14288729 |
T |
|
| Q |
201 |
ttgacattacgtgaaagggtgtataatataatctcttttagtagtagaggatgtaccataaaacccaaagggtaaaaattgagagcttgtaatgctgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14288730 |
ttgacattacgtgaaagggtgtataatataatatattttagtagtcgaggatgtaccataaaacccaaagggtaaaaattgagagcttgtagtgctgttg |
14288829 |
T |
|
| Q |
301 |
agtgagataaaattttagagaccaccttaaagtttgaagaatgcaatgtaaggat-----------------gattcttccatcttttggagagtatgca |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
14288830 |
agtgagataaaattttagagaccaccttaaagtttgaagaatacaatgtaaggatgggtaaatgcttccagagattcttccatcttttggagagtatgca |
14288929 |
T |
|
| Q |
384 |
agtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcaccaagcttgtcttcctcgtaatgaagattatgc |
483 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||| |
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|
| T |
14288930 |
agtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcactaagcctgtcttcctcgtaatcattattatg- |
14289028 |
T |
|
| Q |
484 |
cttcttcttcctctcttgttcattat---ttgtaaacgtaagataaaatgatgatttatttatggagaaattaattg-------aagtgaaaatacctcg |
573 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
14289029 |
--tcttcttcctctcttgttcattatttgttgtaagcgtatggcaaaatgatgatttatttatggagaaattaattgaaataataagtgaaagtacctcg |
14289126 |
T |
|
| Q |
574 |
ttcagttcagagtgatttatgcaactttggatggaatggaacagccagaacccccaccgccgcaactcaagtcgaattcagatctgcacctctcgccgct |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
14289127 |
ttcagttcagagtgatttatgcaactttggatggaatggaacagccagaacctccaccgccgcaactcaagtccaattcagatctgcacctctcaccgct |
14289226 |
T |
|
| Q |
674 |
cctccgccatcattattacaaatcaataagtttgttttgtttaatttaattaaaaataaactataacgagacaacaaattggttctgttgggagttaacg |
773 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
14289227 |
cctccgccatcattattacaaatcaataagtttcttttgtttaatttaattaaaaataaactataacgagacaacaaattggttctattgggagttatcg |
14289326 |
T |
|
| Q |
774 |
tttgtttatgcagagaaggatacgaatgttttcgggtt |
811 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
14289327 |
tttgtttatgcggagaaggatatgaatgtttacgggtt |
14289364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 316 - 783
Target Start/End: Original strand, 45498137 - 45498604
Alignment:
| Q |
316 |
tagagaccaccttaaagtttgaagaatgcaatgtaaggatgattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45498137 |
tagagaccaccttaaagtttgaagaatgcaatgtaaggatgattcttccatcttttggagagtatgcaagtttgaacggcgcatttggttttcaaaaaag |
45498236 |
T |
|
| Q |
416 |
acataatgtgaagtaaaacgcaatcaggtaaatcaccaagcttgtcttcctcgtaatgaagattatgccttcttcttcctctcttgttcattatttgtaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45498237 |
acataatgtgaagtaaaacgcaatcaggtaaatcactaagcctgtcttcctcgtaatgaagattatgccttcttcttcctctcttgttcattatttgtaa |
45498336 |
T |
|
| Q |
516 |
acgtaagataaaatgatgatttatttatggagaaattaattgaagtgaaaatacctcgttcagttcagagtgatttatgcaactttggatggaatggaac |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45498337 |
acgtaagataaaatgatgatttatttatggagaaattaattgaagtgaaagtacctcgttcagttcagagtgatttatgcaactttggatggaatggaac |
45498436 |
T |
|
| Q |
616 |
agccagaacccccaccgccgcaactcaagtcgaattcagatctgcacctctcgccgctcctccgccatcattattacaaatcaataagtttgttttgttt |
715 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45498437 |
agccagaacctccaccgccgcaactcaagtcgaattcagatctgcacctctcgccgctcctccgccatcattattacaaatcaataagtttgttttgttt |
45498536 |
T |
|
| Q |
716 |
aatttaattaaaaataaactataacgagacaacaaattggttctgttgggagttaacgtttgtttatg |
783 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
45498537 |
aatttaattaaaaataaactataacgagacaacaaattggttatgttgggagttaacgtttgtttatg |
45498604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 703 - 823
Target Start/End: Original strand, 45498594 - 45498715
Alignment:
| Q |
703 |
gtttgttt-tgtttaatttaattaaaaataaactataacgagacaacaaattggttctgttgggagttaacgtttgtttatgcagagaaggatacgaatg |
801 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45498594 |
gtttgtttatgtttaatttaattaaaaataaactataacgagacaacaaattggttctgttgggagttaacgtttgtttaagcagagaaggatacgaatg |
45498693 |
T |
|
| Q |
802 |
ttttcgggtttctgcagagaag |
823 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45498694 |
ttttcgggtttctgcagagaag |
45498715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 356 - 451
Target Start/End: Complemental strand, 32413696 - 32413601
Alignment:
| Q |
356 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
451 |
Q |
| |
|
|||||||||||||| |||| | |||||||||| ||||||| |||||| |||||| | || | |||||||||||||| ||||||| |||||||| |
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|
| T |
32413696 |
gattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac |
32413601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 7115552 - 7115647
Alignment:
| Q |
356 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
451 |
Q |
| |
|
||||||||||||||||||| | | ||||||| ||| ||| ||||||| ||||||||||| | |||||||||||||| |||||||||||||||| |
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|
| T |
7115552 |
gattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcac |
7115647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 7120624 - 7120719
Alignment:
| Q |
356 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
451 |
Q |
| |
|
||||||||||||||||||| | | ||||||| ||| ||| ||||||| ||||||||||| | |||||||||||||| |||||||||||||||| |
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|
| T |
7120624 |
gattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcac |
7120719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 7124028 - 7124123
Alignment:
| Q |
356 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
451 |
Q |
| |
|
||||||||||||||||||| | | ||||||| ||| ||| ||||||| ||||||||||| | |||||||||||||| |||||||||||||||| |
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|
| T |
7124028 |
gattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcac |
7124123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 357 - 464
Target Start/End: Original strand, 7140743 - 7140850
Alignment:
| Q |
357 |
attcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcaccaagc |
456 |
Q |
| |
|
|||||||||||||||||| | || ||||||| ||| ||| |||| || ||||||||||| | |||||||||||||| || || |||||||||| | | |
|
|
| T |
7140743 |
attcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaac |
7140842 |
T |
|
| Q |
457 |
ttgtcttc |
464 |
Q |
| |
|
|||||||| |
|
|
| T |
7140843 |
ttgtcttc |
7140850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 8656657 - 8656752
Alignment:
| Q |
356 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
451 |
Q |
| |
|
|||||||||||||||||| | | ||||||| ||| ||| ||||||| ||||||||||| | |||||||||||||| ||||| || ||||||| |
|
|
| T |
8656657 |
gattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcggggaaatcac |
8656752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 464
Target Start/End: Original strand, 8680357 - 8680464
Alignment:
| Q |
357 |
attcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcaccaagc |
456 |
Q |
| |
|
|||||||||||||||||| | || ||||||| ||| ||| |||| || ||||||||||| | |||||||||||||| || || | |||||||| | | |
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|
| T |
8680357 |
attcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaac |
8680456 |
T |
|
| Q |
457 |
ttgtcttc |
464 |
Q |
| |
|
|||||||| |
|
|
| T |
8680457 |
ttgtcttc |
8680464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 443
Target Start/End: Complemental strand, 13492004 - 13491917
Alignment:
| Q |
356 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcagg |
443 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||| || |||||| | ||||||||||| |||||||||||||||||||||||| |
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|
| T |
13492004 |
gattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcagg |
13491917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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