View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_high_24 (Length: 484)
Name: NF15465_high_24
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_24 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Complemental strand, 1085870 - 1085412
Alignment:
| Q |
16 |
taatgcagattagatttcacaataaaatgattcaataaaatgtgtttcttggtctcttaattcaattagatttatgttgtgaggttgatacacttatagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085870 |
taatgcagattagatttcacaataaaatgattcaataaaatgtgtttcttggtctcttaattcaattagatttatgttgtgaggttgatacacttatagc |
1085771 |
T |
|
| Q |
116 |
tgaccaattttgaaccagaaaaactaattggttacgcctttcaaaaattgtggttgtatggtttagttatttggttatatgtatttttatgtgaaaacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085770 |
tgaccaattttgaaccagaaaaactaattggttacgcctttcaaaaattgtggttgtatggtttagttatttggttatatgtatttttatgtgaaaacaa |
1085671 |
T |
|
| Q |
216 |
tataannnnnnnaccaatttatcaacaaaatatcaaaagtgaccacgttctttgtttcctggtctcttaattgtactagatttttgttgtgtggttggta |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085670 |
tataatttttttaccaatttatcaacaaaatatcaaaagtgaccacgttctttgtttcctggtctcttaattgtactagatttttgttgtgtggttggta |
1085571 |
T |
|
| Q |
316 |
cacatccaggtgaccaattttgaacgcaggaaaaactatggttacgcctttgaaaatttgtggttatatggttcaattatttgttgtatgtatttatcct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1085570 |
cacatccaggtgaccaattttgaacgcaggaaaaactatggttacgcctttgaaaatttgtggttatatggttcaattatttgttgtatgtgtttatcct |
1085471 |
T |
|
| Q |
416 |
atgcagaggccataatcaaggaagcttggaaggaagttgggtgaaatggtttttgatga |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085470 |
atgcagaggccataatcaaggaagcttggaaggaagttgggtgaaatggtttttgatga |
1085412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 146 - 474
Target Start/End: Original strand, 24996911 - 24997242
Alignment:
| Q |
146 |
gttacgcctttcaaaaattgtggttgtatggtttagttatttggttatatgtattttt---atgtgaaaacaatataannnnnnnaccaatttatcaaca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| ||| |
|
|
| T |
24996911 |
gttacgcctttcaaaaattgtggttgtatggtttagttatttggttatatgtattttttttatgggaaaacaatataatttatttacaaatttatacaca |
24997010 |
T |
|
| Q |
243 |
aaatatcaaaagtgaccacgttctttgtttcctggtctcttaattgtactagatttttgttgtgtggttggtacacatccaggtgaccaattttgaacgc |
342 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24997011 |
aaatatcaaaagtgaccacattctttgtttcctggtctcttaattgtactagatttttgttgtgaggttgccacacattcaggtgaccaattttgaacgc |
24997110 |
T |
|
| Q |
343 |
aggaaaaactatggttacgcctttgaaaatttgtggttatatggttcaattatttgttgtatgtatttatcctatgcagaggccataatcaaggaagctt |
442 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
24997111 |
aggaaaaactatggttatgcctttgaaaatttgtggttatatggttcagttatttgttgtatgtatttatcatgtgcagaggccataatcaaggaagctt |
24997210 |
T |
|
| Q |
443 |
ggaaggaagttgggtgaaatggtttttgatga |
474 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
24997211 |
ggaaggaagttgagtgaaatggtttttgatga |
24997242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 11428600 - 11429008
Alignment:
| Q |
14 |
cataatgcagattagatttcacaataaaatgattcaataaaatgtgtttcttggtctcttaattcaattagatttatgttgtgaggttgatacacttata |
113 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || |
|
|
| T |
11428600 |
cataatgtagattagatttcacactaaaatgattcaataaaatgtgtttcttggtctcttaatttaattagatttatgttgtgagtttattacacttgta |
11428699 |
T |
|
| Q |
114 |
gctgaccaattttgaa-ccagaaaaactaattggttacgccttt-caaaaattgtggttgtatggtttagttatttggttatatgtatttttatgtgaaa |
211 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||| ||| |||||| |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
11428700 |
gctgaacaattttgaatgcaggaaaactaattgcttaggcctttagaaaaattgcggttatatggttccgttatttggttatatgtttttttatgtgaaa |
11428799 |
T |
|
| Q |
212 |
acaatataannnnnnnaccaatttatcaacaaaatatcaaaagtgaccacgttctttgtttcctggtctcttaattgtactagatttttgttgtgtggtt |
311 |
Q |
| |
|
||||||| | || ||||||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||| ||||| | || |
|
|
| T |
11428800 |
acaatatca-ttttttacgaatttatcatcaaaatatcaaaagtgaccatcttctatgtttcatggtctcttaattgtattagattttttttgtgagctt |
11428898 |
T |
|
| Q |
312 |
ggtacacatccaggtgaccaattttgaacgcaggaaaaactatggttacgcctttgaaaatttgtggttatatggttcaattattt-gttgtatgtattt |
410 |
Q |
| |
|
||||||| || ||| ||||||||||||| ||| |||||| ||||||||||| |||||||| | ||||||||| |||||| |||||| |||| |||||||| |
|
|
| T |
11428899 |
ggtacacttctaggcgaccaattttgaatgcatgaaaaattatggttacgcgtttgaaaaatcgtggttatagggttcagttatttggttgaatgtattt |
11428998 |
T |
|
| Q |
411 |
atcctatgca |
420 |
Q |
| |
|
|||| |||| |
|
|
| T |
11428999 |
ctcctgtgca |
11429008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 24997036 - 24997178
Alignment:
| Q |
58 |
tgtttcttggtctcttaattcaattagatttatgttgtgaggttgatacacttatagctgaccaattttgaac-ca-gaaaaactaattggttacgcctt |
155 |
Q |
| |
|
|||||| ||||||||||||| | ||||||| ||||||||||||| |||| | || ||||||||||||||| || ||||||||| |||||| ||||| |
|
|
| T |
24997036 |
tgtttcctggtctcttaattgtactagatttttgttgtgaggttgccacacattcaggtgaccaattttgaacgcaggaaaaacta--tggttatgcctt |
24997133 |
T |
|
| Q |
156 |
tcaaaaattgtggttgtatggtttagttatttggttatatgtattt |
201 |
Q |
| |
|
| |||| |||||||| ||||||| |||||||| ||| ||||||||| |
|
|
| T |
24997134 |
tgaaaatttgtggttatatggttcagttattt-gttgtatgtattt |
24997178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 474
Target Start/End: Original strand, 11429042 - 11429072
Alignment:
| Q |
444 |
gaaggaagttgggtgaaatggtttttgatga |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11429042 |
gaaggaagttgggtgaaatggtttttgatga |
11429072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 22893412 - 22893679
Alignment:
| Q |
16 |
taatgcagattagatttcacaataaaatgattcaataaaatgtgtttcttggtctcttaattcaattagatttatgttgtgaggttgatacacttatagc |
115 |
Q |
| |
|
|||||| |||||||||||| ||||| || ||| ||| |||||| || ||||| |||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
22893412 |
taatgctgattagatttcataataagataatttaatcaaatgt--ttattggtatcttaattgcattagatttatgttgtgatattgataaacttatagg |
22893509 |
T |
|
| Q |
116 |
tgaccaattttgaa-ccagaaaaactaattggttacgcctttcaaaaattgtggttgtatggtttagttatttggttatatgtattttt-atgtgaaaac |
213 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||| |||||||| |||| |||||||| |||| || | |||||||||||||||||||||| ||||||||| |
|
|
| T |
22893510 |
tgaccaattttgaatgcagaacaacaatttggtcacgcctttgaaaatttgtggttatatgcttcaattatttggttatatgtatttttcctgtgaaaac |
22893609 |
T |
|
| Q |
214 |
aatataannnnnnnaccaatttatcaacaaaatatcaaaagtgaccacgttctttgtttcctggtctcttaat |
286 |
Q |
| |
|
||||| | |||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
22893610 |
aatatcaattttt---caatttatcaacaaaatatcaaaagttaccaccttctatgtttcttggtctcttaat |
22893679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 22893507 - 22893601
Alignment:
| Q |
323 |
aggtgaccaattttgaacgcaggaaaa-actatggttacgcctttgaaaatttgtggttatatggttcaattattt-gttgtatgtatttatcct |
415 |
Q |
| |
|
||||||||||||||||| |||| | || | | |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
22893507 |
aggtgaccaattttgaatgcagaacaacaatttggtcacgcctttgaaaatttgtggttatatgcttcaattatttggttatatgtatttttcct |
22893601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 22893808 - 22893864
Alignment:
| Q |
231 |
aatttatcaacaaaatatcaaaagtgaccacgttctttgtttcctggtctcttaatt |
287 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||| ||||| |||||||| |||| |
|
|
| T |
22893808 |
aatttatcagctaaatatcaaaagtgaccaccttctaggtttcttggtctctaaatt |
22893864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 22894733 - 22894785
Alignment:
| Q |
346 |
aaaaactatggttacgcctttgaaaatttgtggttatatggttcaattatttg |
398 |
Q |
| |
|
||||| ||||||||| |||||| ||| |||||| |||||| |||||||||||| |
|
|
| T |
22894733 |
aaaaaatatggttactcctttgtaaaattgtgggtatatgcttcaattatttg |
22894785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 194527 - 194793
Alignment:
| Q |
16 |
taatgcagattagatttcacaataaaatgattcaataaaatgtgtttcttggtctcttaattcaattagatttatgttgtgaggttgatacacttatagc |
115 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| ||| |||||| ||||||||||||||||| ||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
194527 |
taatgcaaattagatttcataataagatgatttaatcaaatgt--ttcttggtctcttaattgcattagatttctgttgtgatgttgataaacttatagg |
194624 |
T |
|
| Q |
116 |
tgaccaattttgaa-ccagaaaaactaattggttacgcctttcaaaaattgtggttgtatggtttagttatttggttatatgtatttttatgtgaaaaca |
214 |
Q |
| |
|
||||||||||| || ||||| ||| | ||||| | |||||| |||| |||||| | |||| || | |||||||||||||| |||||| |||||||||| |
|
|
| T |
194625 |
tgaccaattttaaatgcagaacaacaatttggtcaggcctttgaaaatttgtggctatatgtttcaattatttggttatatatattttcctgtgaaaaca |
194724 |
T |
|
| Q |
215 |
atataannnnnnnaccaatttatcaacaaaatatcaaaagtgaccacgttctttgtttcctggtctcttaat |
286 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
194725 |
atatcaattttt---caatttatcaacaaaatatcaaaagtgaccaccttctatgtttctcggtctcttaat |
194793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 398
Target Start/End: Original strand, 194567 - 194698
Alignment:
| Q |
268 |
tgtttcctggtctcttaattgtactagatttttgttgtgtggttggtacacatccaggtgaccaattttgaacgcaggaaaa-actatggttacgccttt |
366 |
Q |
| |
|
|||||| |||||||||||||| | ||||||| ||||||| |||| || || | |||||||||||||| || |||| | || | | |||| | |||||| |
|
|
| T |
194567 |
tgtttcttggtctcttaattgcattagatttctgttgtgatgttgataaacttataggtgaccaattttaaatgcagaacaacaatttggtcaggccttt |
194666 |
T |
|
| Q |
367 |
gaaaatttgtggttatatggttcaattatttg |
398 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |
|
|
| T |
194667 |
gaaaatttgtggctatatgtttcaattatttg |
194698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 195826 - 195894
Alignment:
| Q |
331 |
aattttgaacgcaggaaaaac-tatggttacgcctttgaaaatttgtggttatatggttcaattatttg |
398 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| ||| |||||| |||||| |||||||||||| |
|
|
| T |
195826 |
aattttgaacgcaggaaaaaaatatggttactcctttgtaaaattgtgggtatatgcttcaattatttg |
195894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 35663328 - 35663284
Alignment:
| Q |
353 |
atggttacgcctttgaaaatttgtggttatatggttcaattattt |
397 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
35663328 |
atggttacacctttgtaaatttgtggttatatgcttcaattattt |
35663284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 19534324 - 19534404
Alignment:
| Q |
16 |
taatgcagattagatttcacaataaaatgattcaataaaatgtgtttcttggtctcttaattcaattagatttatgttgtgag |
98 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||| |||||| ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
19534324 |
taatgcagattagatttcataataagatgatttaatcaaatgt--ttcttggtctcttaattgcattagatttctgttgtgag |
19534404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 142884 - 142946
Alignment:
| Q |
327 |
gaccaattttgaacgcaggaaaaactatggttacgcctttgaaaatttgtggttatatggttca |
390 |
Q |
| |
|
|||||||||||||| || || || ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
142884 |
gaccaattttgaacacaaaaataa-tatggttacacctttgaaaatttgtggttatattgttca |
142946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 142672 - 142733
Alignment:
| Q |
329 |
ccaattttgaacgcaggaaaaactatggttacgcctttgaaaatttgtggttatatggttca |
390 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
142672 |
ccaattttgaacgccagaaaaaaaatggttatgcctttgaagaattgtggttatattgttca |
142733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 17226943 - 17226881
Alignment:
| Q |
327 |
gaccaattttgaacgcaggaaaaactatggttacgcctttgaaaatttgtggttatatggttca |
390 |
Q |
| |
|
|||||||||||||| || || || ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
17226943 |
gaccaattttgaacacaaaaataa-tatggttacacctttgaaaatttgtggttatattgttca |
17226881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 47290001 - 47290059
Alignment:
| Q |
327 |
gaccaattttgaacgcaggaaaaac-tatggttacgcctttgaaaatttgtggttatat |
384 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||||| ||| || ||||||||| |
|
|
| T |
47290001 |
gaccaattttgcacgcaagaaaaacatatggttacgcctttgtaaaattttggttatat |
47290059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 43472488 - 43472403
Alignment:
| Q |
327 |
gaccaattttgaacgcaggaaaaacta-tggttacgcctttgaaaatttgtggttatatggttcaattattt-gttgtatgtattt |
410 |
Q |
| |
|
|||||||||| |||||| |||||| || |||||||||||||| ||| ||||||||| || ||||| || ||| ||| ||||||||| |
|
|
| T |
43472488 |
gaccaattttaaacgcatgaaaaaataatggttacgcctttgcaaaattgtggttacattgttcatttctttagttatatgtattt |
43472403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University