View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_high_25 (Length: 468)
Name: NF15465_high_25
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 5850965 - 5851402
Alignment:
| Q |
16 |
cacagaccttcacagtaacaattatcaatcattacttcgaatgaaaatagagtatggattgagcttattcttgatgtaaattttatgtcatttcaggcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850965 |
cacagaccttcacagtaacaattatcaatcattacttcgaatgaaaatagagtatggattgagcttattcttgatgtaaattttatgtcatttcaggcat |
5851064 |
T |
|
| Q |
116 |
ggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgatgaggccatatgttcaaaaataataagatttcttcacgttgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5851065 |
ggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgatgaggccatatgttcaaaaataataagatttcttcacgttgg |
5851164 |
T |
|
| Q |
216 |
tctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtttttatgctaaagggtgaaaatttactccccaaaccaagtaaaccc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5851165 |
tctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtttttatgctaaagggtgaaaatttactccccaaaccaagtaaaccc |
5851264 |
T |
|
| Q |
316 |
gggttctacgcaggaaaagatgatacaaatagcataggatctttatctataaatgaagcttcaatcacagtggtagaggcgcgttagaatgactaacatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5851265 |
gggttctacgcaggaaaagatgatacaaatagcataggatctttatctataaatgaagcttcaatcacagtggtagaggcgcgttagaatgactaacatg |
5851364 |
T |
|
| Q |
416 |
gattaaatactgtacaaatgtgctaaaatttggtttct |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5851365 |
gattaaatactgtacaaatgtgctaaaatttggtttct |
5851402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 110 - 404
Target Start/End: Original strand, 5830241 - 5830532
Alignment:
| Q |
110 |
aggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgatgaggccatatgttcaaaaataataagatttcttca |
209 |
Q |
| |
|
|||||||| || ||||||| ||||||||| |||| |||||||||||| |||||| | ||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
5830241 |
aggcatggcgattatggattgaagaaaggtcactggagttcatagctgacatatcgt---atgatgatgccatatcttcaaaaataataagatttattca |
5830337 |
T |
|
| Q |
210 |
cgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtttttatgctaaagggtgaaaatttactccccaaaccaagt |
309 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
5830338 |
tgttggtctattgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgtggtttttatgttgaagggtgaaaatttactccccaaaccaagt |
5830437 |
T |
|
| Q |
310 |
aaacccgggttctacgcaggaaaagatgatacaaatagcataggatctttatctataaatgaagcttcaatcacagtggtagaggcgcgttagaa |
404 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||||||||||||||| ||| |||||||| ||||||||| || || |||||||||| ||||| |
|
|
| T |
5830438 |
aaacccgggttctatgcaggaagagatactacaaatagcataggatcttcatcaataaatgatgcttcaatctcaatgttagaggcgcggtagaa |
5830532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 56 - 380
Target Start/End: Original strand, 5804442 - 5804763
Alignment:
| Q |
56 |
atgaaaatagagtatggattgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagc |
155 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| | ||| ||| ||||||||| ||||||||||||||||||| || |||||||| ||||| | || |
|
|
| T |
5804442 |
atgaaaattgagtaaggattgagcttactcttactataactttgatgtcattttaggcatggagactatggattgagcaaaggccagaggagttgcttgc |
5804541 |
T |
|
| Q |
156 |
taacatattatacgatgatgaggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaac |
255 |
Q |
| |
|
| |||||||||| ||| |||| ||||| ||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5804542 |
tgacatattatatgataatga---catatcttcaaaaataataagatttattcatgttgggctattgtgtgtacaacagaaaccagaaaataggcctaac |
5804638 |
T |
|
| Q |
256 |
atgtcatctgcggtttttatgctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaaaagatgatacaaatagcataggat |
355 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
5804639 |
atgtcatctgtggtttttatgttaaagggtgaaaatttactccccaaaccaagtaaacctggcttctatgcaggaggagatgatacaaatagcgtaggat |
5804738 |
T |
|
| Q |
356 |
ctttatctataaatgaagcttcaat |
380 |
Q |
| |
|
|| ||||||| ||||||||||||| |
|
|
| T |
5804739 |
ctccatctatatatgaagcttcaat |
5804763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 74 - 364
Target Start/End: Complemental strand, 5500924 - 5500634
Alignment:
| Q |
74 |
ttgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatga |
173 |
Q |
| |
|
||||||||| || || ||||| ||| ||||||||| ||||||||||||||||||| |||||||| ||||| ||||| |||||| || ||||||| ||||| |
|
|
| T |
5500924 |
ttgagcttactcatgttgtaactttgatgtcattttaggcatggagactatggattgaagaaagaccactggagttaatagctgacgtattatatgatga |
5500825 |
T |
|
| Q |
174 |
tgaggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggttttt |
273 |
Q |
| |
|
||| ||||||||| || ||||| |||||||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5500824 |
tgacgccatatgtacagaaatactaagatttattcatgtgggtctattgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgtggttttt |
5500725 |
T |
|
| Q |
274 |
atgctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaaaagatgatacaaatagcataggatctttatcta |
364 |
Q |
| |
|
||| ||||||||||||| ||||| || ||||||||| |||||||||||||||||| || ||| ||| ||||||||||| ||||| ||||| |
|
|
| T |
5500724 |
atgttaaagggtgaaaagttacttccgaaaccaagtgaacccgggttctacgcagcaagcgataataaaaatagcatagaatcttcatcta |
5500634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 75 - 349
Target Start/End: Complemental strand, 5482678 - 5482407
Alignment:
| Q |
75 |
tgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgat |
174 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||| |||||| |||||| | ||||| |
|
|
| T |
5482678 |
tgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgt---atgat |
5482582 |
T |
|
| Q |
175 |
gaggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggttttta |
274 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5482581 |
gatgtcatatcttcaaaaataataagatttattcatgttggtctattgtgtgttcaacagaaaccagaaaataggcctaacatgtcatctgtggttttta |
5482482 |
T |
|
| Q |
275 |
tgctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaaaagatgatacaaatagca |
349 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5482481 |
tgttaaagggtgaaaatttactccccaaaccaaatgaacccgggttctacgcaggaggagatgatactaatagca |
5482407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 74 - 364
Target Start/End: Complemental strand, 5488107 - 5487817
Alignment:
| Q |
74 |
ttgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatga |
173 |
Q |
| |
|
||||||||| || || ||||| ||| ||||||||| ||||||||| ||||||||| |||||||| ||||| ||||| |||||| || ||||||| ||||| |
|
|
| T |
5488107 |
ttgagcttactcatgttgtaactttgatgtcattttaggcatggaaactatggattgaagaaagaccactggagttaatagctgacgtattatatgatga |
5488008 |
T |
|
| Q |
174 |
tgaggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggttttt |
273 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
5488007 |
tgaggccatatgttcagaaataataagatttattcatgttggtctattgtgtgtgcaacagctaccagaaaataggcctaacatgtcatctgtggtcttt |
5487908 |
T |
|
| Q |
274 |
atgctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaaaagatgatacaaatagcataggatctttatcta |
364 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| | ||||||||||||| || | || ||| | ||||||||||||| ||||| ||||| |
|
|
| T |
5487907 |
atgttaaagggtgaaaagttactccccaaaccaaatgaacccgggttctatgctgcaagggataaaacaaatagcatagaatcttcatcta |
5487817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 100 - 328
Target Start/End: Original strand, 5856085 - 5856313
Alignment:
| Q |
100 |
atgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgatgaggccatatgttcaaaaataataa |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5856085 |
atgtcattttaggcatggagactatggattgaagaaagaccactagagttaatagcagacatattagacgatgatgagcccatatgttcagaaataataa |
5856184 |
T |
|
| Q |
200 |
gatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtttttatgctaaagggtgaaaatttactccc |
299 |
Q |
| |
|
||||| |||| ||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| ||| |||||| |||||||||||| |||||||| |
|
|
| T |
5856185 |
gatttattcatgttggtctattgtgtgtacaacagctaccagaagataggcctaatatgtcatctgtggtctttatgttaaagggtgaaaggttactccc |
5856284 |
T |
|
| Q |
300 |
caaaccaagtaaacccgggttctacgcag |
328 |
Q |
| |
|
|||||||| | |||||||||||||||||| |
|
|
| T |
5856285 |
caaaccaaatgaacccgggttctacgcag |
5856313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 77 - 350
Target Start/End: Complemental strand, 5523789 - 5523516
Alignment:
| Q |
77 |
agcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgatga |
176 |
Q |
| |
|
|||||| || || ||||| ||| ||||||||| ||||||||| ||||||||| |||||||| ||||| ||||| ||||| |||||||||| |||||||| |
|
|
| T |
5523789 |
agcttactcatgttgtaactttgatgtcatttaaggcatggaaactatggattgaagaaagaccactggagttaatagcagacatattatatgatgatga |
5523690 |
T |
|
| Q |
177 |
ggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtttttatg |
276 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| |||| ||||| ||| ||||||| |||||||||| |||||||||| ||| |||||| |
|
|
| T |
5523689 |
ggccatatgttcagaaataataagatttattcatgttggtctattgtgcgtacagcagctaccagaagataggcctaatatgtcatctgtggtctttatg |
5523590 |
T |
|
| Q |
277 |
ctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaaaagatgatacaaatagcat |
350 |
Q |
| |
|
||||||||||||| |||||||| ||||||| | |||||||||||||||| | || ||| ||||||||||||| |
|
|
| T |
5523589 |
ttaaagggtgaaaagttactcccgaaaccaaatgaacccgggttctacgctgcaagggataatacaaatagcat |
5523516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 71 - 331
Target Start/End: Complemental strand, 5452838 - 5452581
Alignment:
| Q |
71 |
ggattgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacga |
170 |
Q |
| |
|
|||||||||||| ||| ||||| || ||||||||| ||||||||||||| ||||| |||| |||||| ||||| |||||| |||| |||||||| |
|
|
| T |
5452838 |
ggattgagcttactctgtctgtaaccttgatgtcattttaggcatggagactgtggattgaaggcaggccagaggagttaatagctgacatgttatacga |
5452739 |
T |
|
| Q |
171 |
tgatgaggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtt |
270 |
Q |
| |
|
||| ||| ||||| || |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5452738 |
tga---ggcaatatgctccgaaataataagatttattcatgttggtctattgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgtggtt |
5452642 |
T |
|
| Q |
271 |
tttatgctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaa |
331 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
5452641 |
tttatgttaaagggcgaaaagttactcccaaaaccaagtgaacccgggttctacggaggaa |
5452581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 74 - 336
Target Start/End: Complemental strand, 20341711 - 20341452
Alignment:
| Q |
74 |
ttgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatga |
173 |
Q |
| |
|
||||||||| |||| ||||| || ||||||||| ||||||||||||||||||| ||||||||| || ||||| |||||| |||||| ||| ||| |
|
|
| T |
20341711 |
ttgagcttactctttttgtaaccttgatgtcattttaggcatggagactatggattgaagaaagggcaaaggagttaatagctgacatatcata---tga |
20341615 |
T |
|
| Q |
174 |
tgaggccatatgttcaaaaataataagatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggttttt |
273 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||| || ||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20341614 |
tgaggccatatgttcagatataataagatttattcatgtgggtttattgtgtgtacaacagaaagcagaaaataggcctaacatgtcatctgtggttttt |
20341515 |
T |
|
| Q |
274 |
atgctaaagggtgaaaatttactccccaaaccaagtaaacccgggttctacgcaggaaaagat |
336 |
Q |
| |
|
||| |||||||||| || |||||||| | ||||||| |||| |||||||| ||||||| |||| |
|
|
| T |
20341514 |
atgttaaagggtgagaagttactcccaacaccaagtgaacctgggttctatgcaggaagagat |
20341452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 100 - 336
Target Start/End: Complemental strand, 5444413 - 5444180
Alignment:
| Q |
100 |
atgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatattatacgatgatgaggccatatgttcaaaaataataa |
199 |
Q |
| |
|
||||||||| ||||||||| | | ||||| |||| |||||| ||||| || ||| |||||||||| ||||||||| || |||||| ||||||||| |
|
|
| T |
5444413 |
atgtcattttaggcatggaaattgtggattgaaggcaggccagaggagttaatggctgacatattata---tgatgaggcaatgtgttcagaaataataa |
5444317 |
T |
|
| Q |
200 |
gatttcttcacgttggtctactgtgtgtacaacagaaaccagaaaataggcctaacatgtcatctgcggtttttatgctaaagggtgaaaatttactccc |
299 |
Q |
| |
|
||||| |||| ||||||||| ||||||| |||||| ||| ||||||||||||||||||||||| | |||||||||| ||||||| ||||| ||||| || |
|
|
| T |
5444316 |
gatttattcatgttggtctattgtgtgtgcaacagctaccggaaaataggcctaacatgtcatcggtggtttttatgttaaagggcgaaaagttacttcc |
5444217 |
T |
|
| Q |
300 |
caaaccaagtaaacccgggttctacgcaggaaaagat |
336 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
5444216 |
gaaaccaagtgaacccgggttctacggaggaagagat |
5444180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University