View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_27 (Length: 462)
Name: NF15465_high_27
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 43595231 - 43595680
Alignment:
| Q |
13 |
taggacagctcaaaagaagatatggtgtaagtggtgccgatgacgttgtgagatctttaagctgcatttggatttcacatattcatgccgatcaccacac |
112 |
Q |
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| T |
43595231 |
taggacagctcaaaagaagatatggtgtaagtggtgccgatgacgttgtgagatctttaagctgcatttggatttcacatattcatgccgatcaccacac |
43595330 |
T |
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| Q |
113 |
tgggttgacaaggattctcgctctacgacgtgatttgctgaagggggttcctcatgaaccggtgcttgttgtaggaccaaggatgctcaagagatattta |
212 |
Q |
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| T |
43595331 |
tgggttgacaaggattctcgctctacgacgtgatttgctgaagggggttcctcatgaaccggtgcttgttgtaggaccaaggatgctcaagagatattta |
43595430 |
T |
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| Q |
213 |
gatgcataccatagactagaagatttagatatgttatttcttgactgcaagcacacctttgaagcgtcattggctgattttgagaatgacttgcaagaaa |
312 |
Q |
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| T |
43595431 |
gatgcataccatagactagaagatttagacatgttatttcttgactgcaagcacacctttgaagcgtcattggctgattttgagaatgacttgcaagaaa |
43595530 |
T |
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| Q |
313 |
cagttaattctctggatctgaacaataataatgcagaaataaatgcatcaaaagttgattcaactttatttgctagagggtctcctatgcaaagcctttg |
412 |
Q |
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| T |
43595531 |
cagttaattctctggatctgaacaataataatgcagaaataaatgcatcaaaagttgattcaactttatttgctagagggtctcctatgcaaagcctttg |
43595630 |
T |
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| Q |
413 |
gaaaagaccaggtagtcctgttgacaaagacacagtttatcccctcctac |
462 |
Q |
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| T |
43595631 |
gaaaagaccaggtagtcctgttgacaaagacacagtttatcccctcctac |
43595680 |
T |
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