View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_high_28 (Length: 459)
Name: NF15465_high_28
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 35891475 - 35891044
Alignment:
| Q |
19 |
tcaagtcctcatgatttgcagtactagttgttgtgggaattaagcgtccatctgatactggcagagttgttggagaaaggtgactcgtttgtctttctac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35891475 |
tcaagtcctcatgatttgcagtactagttgttgtgggaattaagcgtccatctgacactggcggagttgttggagaaaggtgactcgtttgtctttctac |
35891376 |
T |
|
| Q |
119 |
taactttccagaagcgtctaattctttgacatccttttctaaatctgacttaacatttggagcagcagcaacagtagatactccaactgatttctgcgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35891375 |
taactttccagaagcgtctaattctttgacatccttttctaaatctgacttaacatttggagcagcagcaacagtagatactccaactgatttctgcgtt |
35891276 |
T |
|
| Q |
219 |
tgtctttctactaactgatttccagaacctgaattagcatttggagcaggagcagcagtagcattagttcctccaacagatttcaactctgtctttattt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35891275 |
tgtctttctactaactgatttccagaacctgaattagcatttggagcaggagcagcagtagcattagttcctccaacagatctcaactctgtctttattt |
35891176 |
T |
|
| Q |
319 |
ccttggaagtgtccgcaataatctgattaatcaattgataaatattgtttattcaatatactcacttttaataaaacgaattgcgtgaaactttctctaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35891175 |
ccttggaagtgtccgcaataatctgattaatcaattgataaatattgtttattcaatatactcacttttaataaaacgaattgcgtgaaactttctctaa |
35891076 |
T |
|
| Q |
419 |
cacattatttattattcaatggaaattcatct |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35891075 |
cacattatttattattcaatggaaattcatct |
35891044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University