View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_high_29 (Length: 457)
Name: NF15465_high_29
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 32168801 - 32169239
Alignment:
| Q |
1 |
ttccacaatataaaagtttgcagtgtaaccgcaatcgcgactgcatttaaaaccatgatgagaaggaagggcttggcacatttgatcatagtgaggttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32168801 |
ttccacaatataaaagtttgcagtgtaaccgcaatcgcgactgcatttaaaaccatgatgagaaggaagggcttggcacatttgatcatagtgaggttta |
32168900 |
T |
|
| Q |
101 |
tcaatatgaatccctttgtcaagtggtggattatgggtttgactaaggaaatattaacacttctacannnnnnnnnnaattgtaatacacacacatgcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32168901 |
tcaatatgaatccctttgtcaagtggtggattatgggtttgactaaggaaatattaacacttctacattttttttt-aattgtaatacacacacatgcca |
32168999 |
T |
|
| Q |
201 |
agaaaatttccttggttgtgccatttgtattcttaatgagtaaagatttgttccaattttacacgattgttttgttttcagttgcatttgcttgatttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32169000 |
agaaaatttccttggttgtgccatttgtattcttaatgagtaaagatttgttccaattttacacgattgttttgttttcagttgcatttgcttgatttag |
32169099 |
T |
|
| Q |
301 |
ttgtttgatgaatagtattagaaatggttactttcaaagaaagagtttcaaacattcaaatttgtaaccattaaaagaagtcttctttattttttggttc |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32169100 |
ttgtttgatgaatagtattagaaattgttactttcaaagaaagagtttcaaacattcaaatttgtaaccattaaaagaagtcttctttattttttggttc |
32169199 |
T |
|
| Q |
401 |
acaattcctaaattccaccatgcatgttgaatttggagtt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32169200 |
acaattcctaaattccaccatgcatgttgaatttggagtt |
32169239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 24913971 - 24913940
Alignment:
| Q |
3 |
ccacaatataaaagtttgcagtgtaaccgcaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24913971 |
ccacaatataaaagtttgcagtgtaaccgcaa |
24913940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 12155913 - 12155943
Alignment:
| Q |
6 |
caatataaaagtttgcagtgtaaccgcaatc |
36 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12155913 |
caatataaaagtttgcagtgtaaccgcaatc |
12155943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University