View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_31 (Length: 447)
Name: NF15465_high_31
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 20519943 - 20519610
Alignment:
| Q |
18 |
ttaaccacgattctctacaacatcaaggactgcaacaccactgcaattgctatagtgattgaaaaccttggttaacattacctacctacctatagattct |
117 |
Q |
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| T |
20519943 |
ttaaccacgattctctacaacatcaacgactgcaacaccactgcaattgctatagtgattgaaaaccttggttaacattacctacctacctatagattct |
20519844 |
T |
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| Q |
118 |
ctgttattctgtttctaacttatcagagaacctacattaaacttataagtatataagctagttgttaaaatactcatggtggcatggttattaagctgat |
217 |
Q |
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| T |
20519843 |
ctgttattctgtttctaacttattagagaacctacattaaacttataagtatataagctagtagttaaaatactcatggtgacatggttattaagctgat |
20519744 |
T |
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| Q |
218 |
ttcatgttttctcttatataagtacttaaagaaaacacttatccgaactatctcaattgtgaagtaacttagcctagacaaattaaacaattacatgtac |
317 |
Q |
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| T |
20519743 |
ttcatgttttctcttatataagtacttaaagaaaacacttatccgaactatctcaattgtgaagtaacttagcctagacaaattaaacaattacatgtac |
20519644 |
T |
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| Q |
318 |
actcccaagtcccaacctcaaacaaaattcctca |
351 |
Q |
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| T |
20519643 |
actcccaagtcccaacctcaaacaaaattcctca |
20519610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 349 - 436
Target Start/End: Complemental strand, 20519550 - 20519463
Alignment:
| Q |
349 |
tcataacttatcatgttgcagtcacactgacaaaagcagccaatgcagctacatttgcaatgccgtcgcagagacctctaaaatctgt |
436 |
Q |
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| T |
20519550 |
tcataacttatcatgttgcagtcacactgacaaaagcagccaatgcagctacatttgcaatgccgtcgcagagatctctaaaatctgt |
20519463 |
T |
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