View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_34 (Length: 416)
Name: NF15465_high_34
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 42883997 - 42884396
Alignment:
| Q |
1 |
agtgtcatttaaattcgttcttagttagcctcattttttaggacgacatcatagaacttccctaaacttttgattggtttcataaccctagtcccctctt |
100 |
Q |
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| T |
42883997 |
agtgtcatttaaattcgttcttagttagcctcattttttaggacgacatcatagaacttccctaaacttttgattggtttcataaccctagtcccctctt |
42884096 |
T |
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| Q |
101 |
ttcattaatttccattgagatgccttttgcaacctaagtttagttttaacataaacttatgaaaaggaacggtatgagataaagacagatactggtacat |
200 |
Q |
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| T |
42884097 |
ttcattaatttccattgagatgccctttgcaacctaagtttggttttaacataaacttatgaaaaggaacggtatgagataaagacagatactggtacat |
42884196 |
T |
|
| Q |
201 |
actattagccaac-nnnnnnnnntggtacatacctaagatattgaatatggttaataaaagaggtatttttgtttttatggaaattaaaacccaaccaag |
299 |
Q |
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| T |
42884197 |
actattagccaacaaaaaaaaaatggtacatacctaagatattgaatatggttaataaaagaggtatttttgtttttatggaaattaaaacccaaccaag |
42884296 |
T |
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| Q |
300 |
tgcttgatggtcaatctcgtttctactgaactcaataaactctgatatcttcccttagacattctgctcttatccacaacattagacattcgattattat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884297 |
tgcttgatggtcaatctcgtttctactgaactcaataaactctgatatcttcccttagacattctgctcttatccacaacattagacattcgattattat |
42884396 |
T |
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