View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_41 (Length: 392)
Name: NF15465_high_41
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 1647222 - 1647415
Alignment:
| Q |
19 |
ttcctaggtgacaacaaaagttgttcctcctccattgctagaaagagacttgagatcactgcaagaactgctggtgcttcaaagacaattgaagctgagg |
118 |
Q |
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| T |
1647222 |
ttcctaggtgacaacaaaagtggttcctcctccattgctagaaagagacttgagatcactgcaagaactgctggtgcttcaaagacaattgaagctgagg |
1647321 |
T |
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| Q |
119 |
ttgacaagccacttggtctcactttaggccaaaagaatggtggcggtgttgttataacggtcagtatctcgctcaatttcccattaattcaatg |
212 |
Q |
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| T |
1647322 |
ttgacaagccacttggtctcactttaggccaaaagaatggtggcggtgttgttataacggtcagtatctcgctcaatttcccattaattcaatg |
1647415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 1647417 - 1647553
Alignment:
| Q |
258 |
ttgaaggcatgtctggtatccgacataagcgacacgacaccgacacatatggttaaattccaatatttcacgttctcaaaatattatt----------tg |
347 |
Q |
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| T |
1647417 |
ttgaaggcatgtctggtatccgacataagcgacacgacactgacacatatggttaaattccaatatttcacgttctcaaaatattatttgcgtcgatgtg |
1647516 |
T |
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| Q |
348 |
tcagtgttgtttcctatgtctgatatccttgtctgtg |
384 |
Q |
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| T |
1647517 |
tcagtgttgtgtcctatgtctaatatccttgtctgtg |
1647553 |
T |
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