View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_42 (Length: 391)

Name: NF15465_high_42
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_42
NF15465_high_42
[»] chr7 (12 HSPs)
chr7 (33-345)||(22838731-22839043)
chr7 (33-345)||(22804015-22804327)
chr7 (58-345)||(22888002-22888289)
chr7 (33-345)||(22808299-22808611)
chr7 (65-345)||(22829742-22830022)
chr7 (33-331)||(22874607-22874905)
chr7 (65-331)||(22879348-22879614)
chr7 (65-331)||(22892664-22892930)
chr7 (65-345)||(22813738-22814018)
chr7 (65-345)||(22896980-22897260)
chr7 (33-132)||(22870513-22870612)
chr7 (58-325)||(22912363-22912636)
[»] chr1 (1 HSPs)
chr1 (33-331)||(21151737-21152035)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 33 - 345
Target Start/End: Original strand, 22838731 - 22839043
Alignment:
Q  33 tccagatactgcaaacctggcctcttacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgaca 132  Q
    |||| |||||||| | || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22838731 tccaaatactgcacaacttgcctcatacttggtctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaactccacctcttcagaca 22838830  T
Q  133 gataatctgtccccaaatttacatcttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcc 232  Q
     |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22838831 cataatctgtccccaaatttacatcttttgcctcaagaatatcacctcttttccaacactcaaacacacaatcaactagaattagactctcatattctcc 22838930  T
Q  233 tacacgacctataggtctcctaccacaaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgc 332  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||     
T  22838931 tacacgacctataggcctcctaccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatga 22839030  T
Q  333 taaggtgcaagat 345  Q
    | ||| |||||||    
T  22839031 tcaggagcaagat 22839043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 345
Target Start/End: Original strand, 22804015 - 22804327
Alignment:
Q  33 tccagatactgcaaacctggcctcttacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgaca 132  Q
    |||| |||||||| | || | ||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  22804015 tccaaatactgcacaacttgtctcatacttggtctagccaaaggctctgaatgtgaacacatcaagccaagtttcaacaccaattccacctcttcagaca 22804114  T
Q  133 gataatctgtccccaaatttacatcttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcc 232  Q
     ||||| ||| || |||| ||||||||| |||| |||||| |||||| |||||||||| |||||||||  ||||||||||| |||||||||||  |||||    
T  22804115 cataatttgttcctaaatatacatctttagcctcaagaatttcacctcttttcaaacattcaaacacatgatcaactagaactagactctcattctctcc 22804214  T
Q  233 tacacgacctataggtctcctaccacaaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgc 332  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||     
T  22804215 tacacgacctataggcctcctaccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatga 22804314  T
Q  333 taaggtgcaagat 345  Q
    | ||| |||||||    
T  22804315 tcaggagcaagat 22804327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 58 - 345
Target Start/End: Original strand, 22888002 - 22888289
Alignment:
Q  58 tacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatc 157  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| || ||||  |||||    
T  22888002 tacttggtctagccaaaggctctgaatgtgaacacaacaagccaagtttcaacaccaattccacctcttcagacacataatttgttcctaaatgaacatc 22888101  T
Q  158 ttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggtctcctacca 257  Q
    |||||||| |||||| |||||| ||| | |||| ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  22888102 ttttgcctcaagaatctcacctctttgccaacattcaaacacagaatcaactagaattagactctcattgtctcctacacgacctataggcctcctacca 22888201  T
Q  258 caaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgctaaggtgcaagat 345  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||| | ||| |||||||    
T  22888202 caaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctcttctaatatgttcaggagcaagat 22888289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 33 - 345
Target Start/End: Original strand, 22808299 - 22808611
Alignment:
Q  33 tccagatactgcaaacctggcctcttacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgaca 132  Q
    |||| |||||||| | || | ||| |||||| |||| ||| ||||||||||||  |||||||||| |||||||||||||||||||| |||||||| ||||    
T  22808299 tccaaatactgcacaacttgtctcatacttggtctaaccagaggctctgaatgcaaacacaacaagccaagtttcaacaccaattcaacctcttcagaca 22808398  T
Q  133 gataatctgtccccaaatttacatcttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcc 232  Q
     ||||| ||| || |||| |||||||||||||| |||||| |||||| ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  22808399 cataatttgttcctaaatatacatcttttgcctcaagaatttcacctcttttccaacattcaaacacataatcaactagaattagactctcattttctcc 22808498  T
Q  233 tacacgacctataggtctcctaccacaaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgc 332  Q
     |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22808499 cacacgacctataggcctccgaccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgc 22808598  T
Q  333 taaggtgcaagat 345  Q
    | ||| |||||||    
T  22808599 tcaggggcaagat 22808611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 65 - 345
Target Start/End: Original strand, 22829742 - 22830022
Alignment:
Q  65 tctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatcttttgcc 164  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || |||| |||||| || |||||||||||||||||||||    
T  22829742 tctagccaaaggttctgaatgtgaacacaacaatccaagtttcaacaccaactcgacctcctcagacacataatcagtgcccaaatttacatcttttgcc 22829841  T
Q  165 tgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggtctcctaccacaaacaa 264  Q
    | |||||| |||||| ||| | |||| ||||||||| ||||||||||||||||||||||||  ||||||||||| |||| ||| ||||||||||||||||    
T  22829842 tcaagaatctcacctctttgccaacattcaaacacataatcaactagaattagactctcattgtctcctacacggcctagaggcctcctaccacaaacaa 22829941  T
Q  265 cctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgctaaggtgcaagat 345  Q
    |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||| |||||||    
T  22829942 cctcaagaagaaatgcaccaaaagaaaacacatcagaaaattttgtagccttacctgttctaatatgttcaggagcaagat 22830022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 33 - 331
Target Start/End: Original strand, 22874607 - 22874905
Alignment:
Q  33 tccagatactgcaaacctggcctcttacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgaca 132  Q
    |||| |||||||| | || ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  22874607 tccaaatactgcacaacttgcctcatgcttggtctagccaaaggctctgaatgagaacacaacaatccaagtttcaaaaccaattccacctcttcagaca 22874706  T
Q  133 gataatctgtccccaaatttacatcttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcc 232  Q
     ||||| |||||| ||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||| | ||||| ||  |||| ||| ||    
T  22874707 cataatttgtcccaaaatttacatcttttgcctcaagaatatcacctcttttccaacactcaaatacacaatcaaccaaaattacacattcattttcccc 22874806  T
Q  233 tacacgacctataggtctcctaccacaaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatg 331  Q
    ||||    | ||||| || ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  22874807 tacattggcaataggccttctaccacaagcaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttaccagttctaatatg 22874905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 22879348 - 22879614
Alignment:
Q  65 tctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatcttttgcc 164  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  22879348 tctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaacaccaattccacctcttcagacacataatctgtccccaaatttacatcttttgcc 22879447  T
Q  165 tgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggtctcctaccacaaacaa 264  Q
    | ||||||||||||| ||||| ||||||||||||||| |||||| | ||||| ||  |||| ||| ||||||  | | ||||| |  || |||||| |||    
T  22879448 tcaagaatatcacctcttttccaacactcaaacacactatcaaccaaaattacacattcattttcccctacattagcaataggccctcttccacaagcaa 22879547  T
Q  265 cctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatg 331  Q
    |||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||    
T  22879548 cctcaagaagaaatgcaccaaaagaaaacatatcagaaaatttagtcgccttacctgttctaatatg 22879614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 22892664 - 22892930
Alignment:
Q  65 tctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatcttttgcc 164  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| | | | |||||||||||||||||||||||||    
T  22892664 tctagccaaaggttctgaatgtgaacacaacaatccaagtttcaacaccaactccacctcttcagacacaaagtttgtccccaaatttacatcttttgcc 22892763  T
Q  165 tgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggtctcctaccacaaacaa 264  Q
    | ||||||||||||| ||||| |||||||||| ||||||||||| | ||||| ||| |||| ||| || |||  |   ||||| || ||||||||| |||    
T  22892764 tcaagaatatcacctcttttccaacactcaaatacacaatcaaccaaaattacactttcattttccccaacattagaaataggccttctaccacaagcaa 22892863  T
Q  265 cctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatg 331  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22892864 cctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatg 22892930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 65 - 345
Target Start/End: Original strand, 22813738 - 22814018
Alignment:
Q  65 tctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatcttttgcc 164  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||||| |||| ||||| |||||||||||||||||||||||||    
T  22813738 tctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaacaccaactcaacctcttcagacacataatttgtccccaaatttacatcttttgcc 22813837  T
Q  165 tgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggtctcctaccacaaacaa 264  Q
    | ||||||||||||| ||||| |||||||||| ||||||||||| | ||||| ||| |||| ||| || |||  |   ||||| || ||||||||| |||    
T  22813838 tcaagaatatcacctcttttccaacactcaaatacacaatcaaccaaaattacactttcattttccccaacattagaaataggccttctaccacaagcaa 22813937  T
Q  265 cctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgctaaggtgcaagat 345  Q
    |||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||||||| | ||| |||||||    
T  22813938 cctcaagaagaaatgcaccaaaagaaaacatatcagaaaatttagtggccttacctgttctaatatgttcaggagcaagat 22814018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 65 - 345
Target Start/End: Original strand, 22896980 - 22897260
Alignment:
Q  65 tctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatcttttgcc 164  Q
    |||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| |||| ||| | |||||||||||||||||||||||||    
T  22896980 tctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaacaccaattcaacctcttcagacacatagtttgtccccaaatttacatcttttgcc 22897079  T
Q  165 tgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggtctcctaccacaaacaa 264  Q
    | |||||||| |||  ||||| |||||||||| ||||||||||| | |||||  |  |||| |||  |||||    | ||||| || ||||||||| |||    
T  22897080 tcaagaatattaccccttttccaacactcaaagacacaatcaaccaaaattacgcattcattttccgctacattttcaataggccttctaccacaagcaa 22897179  T
Q  265 cctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatgctaaggtgcaagat 345  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||| ||||    
T  22897180 cctcgagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctagtatgttcaggtgctagat 22897260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 22870513 - 22870612
Alignment:
Q  33 tccagatactgcaaacctggcctcttacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgaca 132  Q
    |||| |||||||| | || | ||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  22870513 tccaaatactgcacaacttgtctcatacttggtctagccaaaggctctgaatgtgaacacatcaagccaagtttcaacaccaattccacctcttcagaca 22870612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 22912363 - 22912636
Alignment:
Q  58 tacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgacagataatctgtccccaaatttacatc 157  Q
    |||||| ||||||||||| |||  |||| ||||| ||||| ||||||||||| |||||||| || |||||   || ||||||    || ||||| |||||    
T  22912363 tacttggtctagccaaagcctcacaatgtgaacataacaaaccaagtttcaaaaccaattcaacttcttcaaccacataatccacacctaaattcacatc 22912462  T
Q  158 ttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcat------attctcctacacgacctataggtctc 251  Q
    ||| |||| || ||| |||||| ||||| |||| ||| | ||| ||||||| | ||||| |||||||       |||| | |||  |  | ||||||||     
T  22912463 tttagcctcaataatctcacctcttttccaacaatcataaacataatcaaccaaaattatactctcactctcacattcccttacttgttcaataggtctt 22912562  T
Q  252 ctaccacaaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttct 325  Q
     |||||||||| |||||||| | |||||| ||||||||| |||||| ||||  | | ||||| |||||||||||    
T  22912563 ttaccacaaactacctcaagtaaaaatgcaccaaaagaatacacatcagaacttgttgtagctttacctgttct 22912636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 33 - 331
Target Start/End: Complemental strand, 21152035 - 21151737
Alignment:
Q  33 tccagatactgcaaacctggcctcttacttgttctagccaaaggctctgaatgagaacacaacaatccaagtttcaacaccaattccacctcttccgaca 132  Q
    |||| |||||||| | || ||||| |||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  21152035 tccaaatactgcacaacttgcctcatacttggtctagccaaaggctcggaatgtgaacacaacaagccaagtttcaacaccaattccacctcttcagaca 21151936  T
Q  133 gataatctgtccccaaatttacatcttttgcctgaagaatatcaccttttttcaaacactcaaacacacaatcaactagaattagactctcatattctcc 232  Q
     ||| | ||| || |||| | |||||||||||| |||||| |||||| ||||| |||| ||||||||| |||||||||||||||||||||| |  |||||    
T  21151935 catattttgttcctaaatatgcatcttttgcctcaagaatttcacctcttttccaacattcaaacacataatcaactagaattagactctcgttgtctcc 21151836  T
Q  233 tacacgacctataggtctcctaccacaaacaacctcaagaagaaatgcgccaaaagaaaacacattagaaaatttagtagccttacctgttctaatatg 331  Q
     ||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  21151835 gacatgacctataggcctcctaccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaagatttagtagccttacctgttctaatatg 21151737  T

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