View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_48 (Length: 365)

Name: NF15465_high_48
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_48
NF15465_high_48
[»] chr3 (13 HSPs)
chr3 (18-361)||(2495589-2495935)
chr3 (142-299)||(2446957-2447114)
chr3 (64-336)||(2634063-2634334)
chr3 (58-365)||(675005-675312)
chr3 (188-365)||(749601-749780)
chr3 (151-316)||(2504120-2504284)
chr3 (246-358)||(9564361-9564474)
chr3 (131-316)||(7331821-7332007)
chr3 (272-365)||(2485428-2485521)
chr3 (327-365)||(2447114-2447152)
chr3 (216-316)||(2641572-2641674)
chr3 (216-316)||(2649065-2649167)
chr3 (18-127)||(2485282-2485386)
[»] scaffold0019 (1 HSPs)
scaffold0019 (58-365)||(2297-2603)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 2495589 - 2495935
Alignment:
Q  18 taaagttgttttgctgctaagatatttggtcatcatgtttttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcat 117  Q
    ||||||||||||||||||||||||| ||||||||   || |||||||||||||||||||||||||||  | ||| || | |||  |||||||||||||||    
T  2495589 taaagttgttttgctgctaagatatatggtcatctcattgttgtgcaaatgatattattgaattcttaaatgcatgcaacagtgcacaattccatagcat 2495688  T
Q  118 tggtgaaatggtctgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgt--ttgccttataatgtctcgatatttttac 215  Q
    |||||||||   |||||||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||  ||||||||||||||||| |||||||||     
T  2495689 tggtgaaatttcctgaatatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttat 2495788  T
Q  216 tttagttgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtttgtttcaatagaagggttat 314  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||||||||     
T  2495789 tttaattgcacctgaagcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttcctttcaatagaagggttac 2495888  T
Q  315 tcggtggctggctgaattgcttaggttcattttatggtctggagctt 361  Q
    ||| |||||||||||||| ||||||||  |||| |||||||||||||    
T  2495889 tcgctggctggctgaattccttaggtttgttttgtggtctggagctt 2495935  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 2446957 - 2447114
Alignment:
Q  142 gatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaat 241  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2446957 gattgagtgtctgagattgtaacaaagttcatttccatatgcatgtttgccttataatgtcacgatatttttactttagttgcacctgaagcctcaaaat 2447056  T
Q  242 agacttataacatcatagttgaaatgcctcttttcaggttggttgtgtttgtttgttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447057 agacttataacatcatagttgaaatgcctcttttcaggttggttgtgtttgtttgttt 2447114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 336
Target Start/End: Original strand, 2634063 - 2634334
Alignment:
Q  64 aaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctgagattgt 161  Q
    ||||||||||||||||||||| || |||||  | |   | |||||||| ||| |||||||||||||  |||||||| |||||| || | |||||||||||    
T  2634063 aaatgatattattgaattcttacatgcacgtcacacattgtacaattc-ataacattggtgaaatgacctgaatataattgatataatttctgagattgt 2634161  T
Q  162 aacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataacatcatagtt 261  Q
    |   ||||||||||||||||| |   ||||||||||||||||| ||||||| | |||  |||||||| ||||||||||||||||||||||||||||||||    
T  2634162 attgaagttcatttccatatgtg---ttgccttataatgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagtt 2634258  T
Q  262 gaaatgcctc-ttttcaggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgctt 336  Q
     ||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||  |  |||||||||||||||    
T  2634259 caaatgtctctttttcaggctggttgtgtttgttcgtttcaatagaagggttattctctatctggctgaattgctt 2634334  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 365
Target Start/End: Complemental strand, 675312 - 675005
Alignment:
Q  58 ttgtgcaaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga 155  Q
    ||||| ||||||||||||||||||||| ||| ||||  | |   | |||||||| ||| |||||||||||||   || |||| |||||| ||||| ||||    
T  675312 ttgtgaaaatgatattattgaattcttacacacacgtaacacattgtacaattc-ataacattggtgaaatgacgtggatatgattgatatagtgcctga 675214  T
Q  156 gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataacat 254  Q
    |||||||   || ||  |||||| ||| |   |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| |    
T  675213 gattgtagtgaattttgtttccacatgtg---ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataactt 675117  T
Q  255 catagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtc 353  Q
    | ||||||||||| ||||||| ||||||||| |||||||||  ||||||||||||||| ||||  | ||||||| ||||||||||||||||||| |||||    
T  675116 cgtagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtc 675017  T
Q  354 tggagctttgct 365  Q
    |||||| |||||    
T  675016 tggagcgttgct 675005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 188 - 365
Target Start/End: Complemental strand, 749780 - 749601
Alignment:
Q  188 ttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctctttt-caggttggtt 285  Q
    |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| || ||||||||||| ||||||| |||||||||     
T  749780 ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtc 749681  T
Q  286 gtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgct 365  Q
    |||||||||  ||||||||||||||| ||||  | ||||||| ||||||||||||||||||| ||||||||||| |||||    
T  749680 gtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgct 749601  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 316
Target Start/End: Original strand, 2504120 - 2504284
Alignment:
Q  151 tctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagactt-at 249  Q
    |||||||||||| | |||||| |||| ||||| | ||| ||||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| |||| ||    
T  2504120 tctgagattgtagcgaagttcctttcaatatgtgtgtt-gccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttat 2504218  T
Q  250 aacatcatagttgaaatgcctcttttcaggttggttgtgtttgtttgtttcaatagaagggttattc 316  Q
    |||||  ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2504219 aacatattagttgaaatgtctcttt-caggttggctgtgtttgtttgtttcaatagaagggttattc 2504284  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 9564474 - 9564361
Alignment:
Q  246 ttataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcat 344  Q
    ||||||| |||||||||||||| ||||||| ||||||||| |||||||||  ||||| ||||||||||||||  | ||||||||||||||||||||||||    
T  9564474 ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaattgcttaggttcat 9564375  T
Q  345 tttatggtctggag 358  Q
    ||| ||||||||||    
T  9564374 tttgtggtctggag 9564361  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 316
Target Start/End: Complemental strand, 7332007 - 7331821
Alignment:
Q  131 tgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctga 230  Q
    ||||||| |||||| |||||||||||||||||   |||||| |||||||||| | ||| | ||||| ||||||| ||||| | | |||| |||||||| |    
T  7332007 tgaatatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtgtt-gtcttatgatgtctcaatattataattttaattgcacctta 7331909  T
Q  231 agcctcaaaatagact-tataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattc 316  Q
    |||||| |||||  |  |||||| | ||||||| |||| ||||||| |||||||| |||||||||||||||||||||||  |||||||    
T  7331908 agcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaatagttattc 7331821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 2485428 - 2485521
Alignment:
Q  272 ttttcaggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgct 365  Q
    ||||||||||| ||||||||||| |||||| | |||||||||||||  |||||||||| ||||||| ||||||||| ||||||||||| |||||    
T  2485428 ttttcaggttgattgtgtttgttcgtttcagttgaagggttattcgcaggctggctgagttgcttatgttcattttgtggtctggagccttgct 2485521  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 2447114 - 2447152
Alignment:
Q  327 tgaattgcttaggttcattttatggtctggagctttgct 365  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2447114 tgaattgcttaggttcattttatggtctggagctttgct 2447152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 2641674 - 2641572
Alignment:
Q  216 tttagttgcacctgaagcctcaaaatagac-ttataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggtta 313  Q
    |||| |||||||| |||||||||| ||  | |||| || | ||||||| |||| ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  2641674 tttaattgcaccttaagcctcaaagtactccttatgacgtaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggtta 2641575  T
Q  314 ttc 316  Q
    |||    
T  2641574 ttc 2641572  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 2649167 - 2649065
Alignment:
Q  216 tttagttgcacctgaagcctcaaaatagac-ttataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggtta 313  Q
    |||| |||||||| |||||||||| ||  | |||| || | ||||||| |||| ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  2649167 tttaattgcaccttaagcctcaaagtactccttatgacgtaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggtta 2649068  T
Q  314 ttc 316  Q
    |||    
T  2649067 ttc 2649065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 2485282 - 2485386
Alignment:
Q  18 taaagttgttttgctgctaagatatttggtcatcatgtttttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcat 117  Q
    ||||||||||||||||||||||||| ||      || || ||||| ||||||||||||||||||| |  |||||| |   ||| |||||||||||||||     
T  2485282 taaagttgttttgctgctaagatatatgt-----atattgttgtgtaaatgatattattgaattcctagacgcacacatcagtgtacaattccatagcaa 2485376  T
Q  118 tggtgaaatg 127  Q
    ||||||||||    
T  2485377 tggtgaaatg 2485386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 58 - 365
Target Start/End: Original strand, 2297 - 2603
Alignment:
Q  58 ttgtgcaaatgatattattgaattctttcacgcacgcgata--gtatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga 155  Q
    ||||| ||||||||||||||||||||| ||| || || | |  || |||||||| ||| ||||||| |||||  |||||||| ||||||||| ||||| |    
T  2297 ttgtgtaaatgatattattgaattcttacacacatgcaacacagtgtacaattc-ataacattggtaaaatgacctgaatataattgatttattgtctta 2395  T
Q  156 gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataacatc 255  Q
    |||| ||   ||||||||||||||||  |   |||||||| |||||||| ||||||| |  ||  |||||||| || |||||||||||||||||||| ||    
T  2396 gattatagtgaagttcatttccatatatg---ttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtc 2492  T
Q  256 atagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtct 354  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||   |||||    
T  2493 atagttgaaatgtctctttttcaggttggttgtgtttgttcgtttcaatagaagggttattctctagctggctgaattgcttaggttcatttgtgggtct 2592  T
Q  355 ggagctttgct 365  Q
    ||||| |||||    
T  2593 ggagcgttgct 2603  T

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