View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_5 (Length: 823)
Name: NF15465_high_5
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 658; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 13 - 805
Target Start/End: Original strand, 2928167 - 2928958
Alignment:
| Q |
13 |
gcagcacagaaaaaagccataccagatcattgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggctactga |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2928167 |
gcagcacagaaaaaagccataccagatcactgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggccactga |
2928266 |
T |
|
| Q |
113 |
tcatgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928267 |
tcatgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaa |
2928366 |
T |
|
| Q |
213 |
gctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacac |
312 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928367 |
gctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacac |
2928466 |
T |
|
| Q |
313 |
ttttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaac |
412 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2928467 |
ttttttcataatcaatggtgacaaat-----aagcatcctatgtatagcataaaaccacaagttctttgttacctgttcaacaaagtgtcgagcaacaac |
2928561 |
T |
|
| Q |
413 |
acgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacctatacatat |
512 |
Q |
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| T |
2928562 |
acgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagaccta------- |
2928654 |
T |
|
| Q |
513 |
taaatcctagagttaaattacggtccacaactgcaagtgcggtc---------------ataattttttacaaaaacatcacaaccgcaattgactacat |
597 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928655 |
-----cctagaattaaattacggtccacaactgcaagtgcggtcataatataaaatattataattttttacaaaaacatcacaaccgcaattgactacat |
2928749 |
T |
|
| Q |
598 |
ttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttag |
697 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928750 |
ttacctgcattttagtataatgtcaagagtcacaatgaattcgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttag |
2928849 |
T |
|
| Q |
698 |
acaaaac-aaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcc |
796 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928850 |
acaaaacaaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcc |
2928949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 498 - 800
Target Start/End: Complemental strand, 2310397 - 2310085
Alignment:
| Q |
498 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtcataat----------tttttacaaaaacatcacaaccgcaa |
587 |
Q |
| |
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||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| |||| ||| ||| ||||||||| |||||||||||| |
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| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
|
| Q |
588 |
ttgactacatttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaac |
687 |
Q |
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||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2310297 |
ttgactacatttacctgaattttagtgtaatatcaagagttacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaac |
2310198 |
T |
|
| Q |
688 |
aaagagttagacaaaacaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaa |
787 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| |
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| T |
2310197 |
aaagagttagacaaaacaaaatcataaaatacctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagac |
2310098 |
T |
|
| Q |
788 |
ctatcttcccatt |
800 |
Q |
| |
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||||||||||||| |
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| T |
2310097 |
ctatcttcccatt |
2310085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 214 - 490
Target Start/End: Complemental strand, 2310703 - 2310431
Alignment:
| Q |
214 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacact |
313 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || || ||||||| ||| || |
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| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggtagtcgatcgataagtggtgacaatct |
2310604 |
T |
|
| Q |
314 |
tttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaaca |
413 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
2310603 |
tttttcaaaatcaatggtgacaaatatctcaagcatcctatgtatagcataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaaca |
2310504 |
T |
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| Q |
414 |
cgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagt |
490 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
2310503 |
tgcgcaacctaattaacacgaaaaccaacataaactgattagtctctattat----cattagctgaaattagcaagt |
2310431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 2310985 - 2310927
Alignment:
| Q |
125 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
183 |
Q |
| |
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|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2310985 |
ctataaggaagaataattaacataaacagagccattgctcataaattcttaaaatattt |
2310927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 714 - 756
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
714 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
756 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 714 - 756
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
714 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
756 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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