View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_51 (Length: 350)
Name: NF15465_high_51
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_51 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 52070645 - 52070982
Alignment:
| Q |
13 |
aaaatatataatacgttaaacatcgttccatgagatttccaagtccacaaacatgaaatgaaagacttcatactatcttagctattttattatttttggt |
112 |
Q |
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| T |
52070645 |
aaaatatataatacgttaaacatcgttccatgagatttccaagtccacaaacatgaaatgaaagacttcatactatcttagctattttattatttttggt |
52070744 |
T |
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| Q |
113 |
aaccactaaccattggtggtagcaatattaaaccgcagaatatatatttacttattgaaggatagtagcacgaaatcaaaataaacaaataaaaagctta |
212 |
Q |
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| T |
52070745 |
aaccactaaccattggtggtagcaatattaaaccgcaaaatatatatttacttattgaaggatagtagcacgaaatcaaaataaacaaataaaaagctta |
52070844 |
T |
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| Q |
213 |
gagtggctaatttaattgagtaaaaaggatgtttaagaaggacatctaattgtaactacaaagtctagagtggttaatttcattctccaagtacatcctc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52070845 |
gagtggctaatttaattgagtaaaaaggatgtttaagaaggacatctaattgtaactacaaagtctagagtggttaatttcattctccaagtacatcctc |
52070944 |
T |
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| Q |
313 |
actggattcgagaaaagaagtgaaataatgaaggttgt |
350 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
52070945 |
actggattcgagaaaagaagtaaaataatgaaggttgt |
52070982 |
T |
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