View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_53 (Length: 348)

Name: NF15465_high_53
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_53
NF15465_high_53
[»] chr7 (13 HSPs)
chr7 (124-348)||(22874151-22874375)
chr7 (131-348)||(22829262-22829479)
chr7 (125-348)||(22803553-22803784)
chr7 (125-348)||(22870051-22870282)
chr7 (248-348)||(22838404-22838500)
chr7 (154-299)||(22807311-22807455)
chr7 (136-348)||(22887528-22887746)
chr7 (32-95)||(22803491-22803554)
chr7 (32-95)||(22869989-22870052)
chr7 (294-348)||(22808014-22808068)
chr7 (32-94)||(22829194-22829256)
chr7 (32-95)||(22887455-22887518)
chr7 (137-181)||(22884916-22884959)
[»] chr1 (1 HSPs)
chr1 (136-303)||(21152254-21152428)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 124 - 348
Target Start/End: Original strand, 22874151 - 22874375
Alignment:
Q  124 aggttgttttagtgcatttgaaggtttttcaggttatttctttgtttaccctttgaatttgctgaataataatagtagtctttttcgtctgctcaaaata 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  22874151 aggttgttttactgcatttgaaggtttttcaggttatttctttgtttaccccttgaatttgctgaataataatagtagtctttttcgtctgctcaaaatt 22874250  T
Q  224 gatacaaacttggaaaccaaataaagtatatgcaaaatcagaaccaaaaagtttaatgagtaaaagctttcatgtatctattaaactacttactcaaaca 323  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22874251 gatacaaacttggaaacaaaatagagtatatgttaaatcagaaccaaaaagtttaatgagtaaaagctttgatgtatctattaaactacttactcaaaca 22874350  T
Q  324 tgatttcacttttcagataacaaac 348  Q
    ||| |||||||||||||||||||||    
T  22874351 tgaattcacttttcagataacaaac 22874375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 131 - 348
Target Start/End: Original strand, 22829262 - 22829479
Alignment:
Q  131 tttagtgcatttgaaggtttttcaggttatttctttgtttaccctttgaatttgctgaataataatagtagtctttttcgtctgctcaaaatagatacaa 230  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||| ||||| |  ||||||| |||||||||||| |||    
T  22829262 tttattgcatttgaaggttttacaggttatttctttgattaccctttgaatttactaaataataattgtagtgtcattcgtctactcaaaatagatgcaa 22829361  T
Q  231 acttggaaaccaaataaagtatatgcaaaatcagaaccaaaa--agtttaatgagtaaaagctttcatgtatctattaaactacttactcaaacatgatt 328  Q
    ||||||  ||| |||||||||||  |||||||| ||| ||||  ||||||||||| ||| ||||||||||| ||||||||||| |||||||| ||||| |    
T  22829362 acttgg--acccaataaagtataaacaaaatcaaaacaaaaaatagtttaatgagaaaatgctttcatgtaactattaaactatttactcaagcatgaat 22829459  T
Q  329 tcacttttcagataacaaac 348  Q
    |||||||| |||||||||||    
T  22829460 tcactttttagataacaaac 22829479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 125 - 348
Target Start/End: Original strand, 22803553 - 22803784
Alignment:
Q  125 ggttgttttagtgcatttgaaggtttttcaggttatttctttgtttaccctttgaat----------ttgctgaataataatagtagtctttttcgtctg 214  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||          || |||||||||||| |||||||  ||| |||     
T  22803553 ggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctctatgatattactgaataataattgtagtctcgttcatcta 22803652  T
Q  215 ctcaaaatagatacaaacttggaaaccaaataaagtatatgcaaaatcagaaccaaaaagtttaatgagtaaaagctttcatgtatctattaaactactt 314  Q
    |||||||||||| |||||||| | ||  ||  ||||||||||||||||||||  ||| ||||||||||  |||||||||||||||||||||||| ||  |    
T  22803653 ctcaaaatagatgcaaacttgaatacgtaa--aagtatatgcaaaatcagaagaaaagagtttaatgaaaaaaagctttcatgtatctattaaattatct 22803750  T
Q  315 actcaaacatgatttcacttttcagataacaaac 348  Q
    |||||| |||||||||||||||||||||||||||    
T  22803751 actcaatcatgatttcacttttcagataacaaac 22803784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 348
Target Start/End: Original strand, 22870051 - 22870282
Alignment:
Q  125 ggttgttttagtgcatttgaaggtttttcaggttatttctttgtttaccctttgaat----------ttgctgaataataatagtagtctttttcgtctg 214  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||          || |||||||||||| |||||||  ||| |||     
T  22870051 ggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctctatgatattactgaataataattgtagtctcgttcatcta 22870150  T
Q  215 ctcaaaatagatacaaacttggaaaccaaataaagtatatgcaaaatcagaaccaaaaagtttaatgagtaaaagctttcatgtatctattaaactactt 314  Q
    |||||||||||| |||||||| | ||  ||  ||||||||||||||||||||  ||| ||||||||||  |||| ||||||||||||||||||| ||  |    
T  22870151 ctcaaaatagatgcaaacttgaatacgtaa--aagtatatgcaaaatcagaagaaaagagtttaatgaaaaaaaactttcatgtatctattaaattatct 22870248  T
Q  315 actcaaacatgatttcacttttcagataacaaac 348  Q
    |||||| |||||||||||||||||||||||||||    
T  22870249 actcaatcatgatttcacttttcagataacaaac 22870282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 22838404 - 22838500
Alignment:
Q  248 agtatatgcaaaatcagaaccaaaaagtttaatgagtaaaagctttcatgtatctattaaactacttactcaaacatgatttcacttttcagataacaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||    
T  22838404 agtatatgcaaaatcagaaccaaaaagtttaatgagtaaaagctttcatgtatctattaaaatactt----aaacatgatttcacttttcagataacaaa 22838499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 299
Target Start/End: Original strand, 22807311 - 22807455
Alignment:
Q  154 aggttatttctttgtttaccctttgaatttgctgaataataatagtagtctttttcgtctgctcaaaatagatacaaacttggaaaccaaataaagtata 253  Q
    |||||||||||||||||||| ||||||||| |||||||||||  |||||||  ||| ||| ||||||||||||||||||||||  ||  |||||||||||    
T  22807311 aggttatttctttgtttaccttttgaatttactgaataataactgtagtctcgttcatctactcaaaatagatacaaacttgg--acgcaataaagtata 22807408  T
Q  254 tgcaaaatcagaac-caaaaagtttaatgagtaaaagctttcatgta 299  Q
    | |||||||| |||  ||||||||||||||| ||| |||||||||||    
T  22807409 tacaaaatcaaaacaaaaaaagtttaatgagaaaatgctttcatgta 22807455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 348
Target Start/End: Original strand, 22887528 - 22887746
Alignment:
Q  136 tgcatttgaaggtttttcaggttatttctttgtttaccctttgaat----------ttgctgaataataatagtagtctttttcgtctgctcaaaataga 225  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||          || ||||| |||||| ||||||| |  ||| | |||||||||||    
T  22887528 tgcatttga-ggttttgcaggttatttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctct--cgtttactcaaaataga 22887624  T
Q  226 tacaaacttggaaaccaaataaagtatatgcaaaatcagaaccaaaa-agtttaatgagtaaaagctttcatgtatctattaaactacttactcaaacat 324  Q
    ||||||||||||  |  ||| |||||||| |||||||| ||| |||| ||||||||||| ||| | ||| ||||| ||||||||| | ||||||||||||    
T  22887625 tacaaacttggacgc--aatgaagtatatacaaaatcaaaacaaaaaaagtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacat 22887722  T
Q  325 gatttcacttttcagataacaaac 348  Q
    |||||||||||| |||||||||||    
T  22887723 gatttcactttttagataacaaac 22887746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 22803491 - 22803554
Alignment:
Q  32 gagaaaagatgaagagctcgtacgagtctttggcacaaacagaatttctgaagttatttagtgg 95  Q
    |||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||    
T  22803491 gagaaaagatgaagagcttgtccgagtctttagcacaaacagaatttctgaagatatttagtgg 22803554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 22869989 - 22870052
Alignment:
Q  32 gagaaaagatgaagagctcgtacgagtctttggcacaaacagaatttctgaagttatttagtgg 95  Q
    |||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||    
T  22869989 gagaaaagatgaagagcttgtccgagtctttagcacaaacagaatttctgaagatatttagtgg 22870052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 22808014 - 22808068
Alignment:
Q  294 catgtatctattaaactacttactcaaacatgatttcacttttcagataacaaac 348  Q
    |||||| ||||||||||| || |||||||||||||||||||||||||||||||||    
T  22808014 catgtaactattaaactattttctcaaacatgatttcacttttcagataacaaac 22808068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 22829194 - 22829256
Alignment:
Q  32 gagaaaagatgaagagctcgtacgagtctttggcacaaacagaatttctgaagttatttagtg 94  Q
    |||||||||||||||||| ||  |||||||| ||||||||| |||||||||||||||||||||    
T  22829194 gagaaaagatgaagagcttgtctgagtctttagcacaaacataatttctgaagttatttagtg 22829256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 22887455 - 22887518
Alignment:
Q  32 gagaaaagatgaagagctcgtacgagtctttggcacaaacagaatttctgaagttatttagtgg 95  Q
    |||||||||||||||||| ||  |||||||| | ||||| | ||||||||||||||||||||||    
T  22887455 gagaaaagatgaagagcttgtttgagtctttagaacaaatataatttctgaagttatttagtgg 22887518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 22884916 - 22884959
Alignment:
Q  137 gcatttgaaggtttttcaggttatttctttgtttaccctttgaat 181  Q
    ||||||||||||||  |||||||||||||||||||||||||||||    
T  22884916 gcatttgaaggtttg-caggttatttctttgtttaccctttgaat 22884959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 21152428 - 21152254
Alignment:
Q  136 tgcatttgaaggtttttcaggttatttctttgtttaccctttgaat----------ttgctgaataataatagtagtctttttcgtctgctcaaaataga 225  Q
    |||||||||||||||| |||||||||| |||| ||||||||| |||          || |||||||||||| |||||||  ||||||| ||||||||||     
T  21152428 tgcatttgaaggttttgcaggttatttatttggttaccctttaaatctttatgatattactgaataataattgtagtctcattcgtctactcaaaatagg 21152329  T
Q  226 tacaaacttggaaaccaaataaagtatatgcaaaatcagaaccaaaaagtttaatgagtaaaagctttcatgtatcta 303  Q
    |||||||||||| ||  ||| | ||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||    
T  21152328 tacaaacttggacac--aatgaggtatatgcaaaatcagaacaaaaaagtttattgag-aaaaactttcatgtatcta 21152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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