View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_54 (Length: 346)

Name: NF15465_high_54
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_54
NF15465_high_54
[»] chr6 (5 HSPs)
chr6 (160-326)||(7978468-7978634)
chr6 (66-130)||(9402514-9402578)
chr6 (151-190)||(29199903-29199942)
chr6 (136-193)||(34178344-34178401)
chr6 (70-122)||(10925550-10925602)
[»] chr8 (13 HSPs)
chr8 (66-128)||(17108301-17108363)
chr8 (66-147)||(29918532-29918611)
chr8 (66-128)||(5793510-5793572)
chr8 (218-295)||(33631821-33631899)
chr8 (66-147)||(17084191-17084272)
chr8 (66-130)||(6388604-6388668)
chr8 (161-199)||(15173889-15173927)
chr8 (136-198)||(33631909-33631971)
chr8 (66-128)||(36274968-36275029)
chr8 (143-199)||(30481430-30481486)
chr8 (66-130)||(30903971-30904035)
chr8 (138-190)||(30904064-30904116)
chr8 (143-199)||(45236088-45236144)
[»] chr2 (12 HSPs)
chr2 (66-130)||(13531875-13531939)
chr2 (66-130)||(25210303-25210367)
chr2 (66-130)||(34544410-34544474)
chr2 (66-137)||(17845485-17845555)
chr2 (143-198)||(44057907-44057962)
chr2 (66-128)||(29656836-29656898)
chr2 (66-143)||(30696850-30696925)
chr2 (67-130)||(13954672-13954735)
chr2 (67-130)||(14095879-14095942)
chr2 (136-199)||(43371570-43371633)
chr2 (143-199)||(3547190-3547246)
chr2 (80-128)||(42995773-42995821)
[»] chr5 (9 HSPs)
chr5 (235-295)||(39422463-39422524)
chr5 (66-130)||(24207612-24207676)
chr5 (66-130)||(12457442-12457506)
chr5 (69-129)||(16311394-16311453)
chr5 (66-128)||(27900503-27900565)
chr5 (74-128)||(35584050-35584103)
chr5 (74-128)||(38972855-38972909)
chr5 (66-130)||(17153094-17153158)
chr5 (102-130)||(18451985-18452013)
[»] chr7 (12 HSPs)
chr7 (67-130)||(11472811-11472874)
chr7 (142-199)||(42908050-42908107)
chr7 (151-190)||(10990879-10990918)
chr7 (151-199)||(18684010-18684058)
chr7 (139-199)||(37103136-37103196)
chr7 (143-190)||(22973416-22973463)
chr7 (143-198)||(32546220-32546275)
chr7 (166-199)||(29014961-29014994)
chr7 (143-199)||(12980405-12980461)
chr7 (143-199)||(26622979-26623035)
chr7 (161-193)||(28309538-28309570)
chr7 (143-199)||(45380135-45380191)
[»] chr4 (23 HSPs)
chr4 (139-190)||(45065274-45065325)
chr4 (66-128)||(33516174-33516236)
chr4 (66-127)||(37384204-37384265)
chr4 (66-130)||(8843904-8843968)
chr4 (66-130)||(8856868-8856932)
chr4 (66-130)||(9929267-9929331)
chr4 (66-130)||(33616215-33616279)
chr4 (66-130)||(39086087-39086150)
chr4 (79-130)||(9280989-9281040)
chr4 (143-198)||(21544608-21544663)
chr4 (79-127)||(4741318-4741366)
chr4 (70-130)||(21714075-21714135)
chr4 (66-130)||(36919054-36919118)
chr4 (143-190)||(14605944-14605991)
chr4 (72-130)||(21956914-21956971)
chr4 (68-130)||(42907820-42907881)
chr4 (151-199)||(1866559-1866607)
chr4 (143-199)||(9929177-9929233)
chr4 (66-130)||(12075731-12075795)
chr4 (151-199)||(25298843-25298891)
chr4 (143-199)||(29527841-29527897)
chr4 (97-129)||(43553408-43553440)
chr4 (74-130)||(50376451-50376507)
[»] chr1 (10 HSPs)
chr1 (66-128)||(16903441-16903503)
chr1 (66-130)||(42729043-42729107)
chr1 (143-198)||(25154837-25154892)
chr1 (66-130)||(13692570-13692635)
chr1 (66-130)||(36421692-36421756)
chr1 (66-130)||(39219184-39219248)
chr1 (69-128)||(43513130-43513189)
chr1 (70-128)||(5703275-5703332)
chr1 (69-122)||(47644966-47645019)
chr1 (70-131)||(48576216-48576277)
[»] scaffold0059 (1 HSPs)
scaffold0059 (136-198)||(70111-70173)
[»] chr3 (4 HSPs)
chr3 (68-130)||(37032197-37032259)
chr3 (136-199)||(40796147-40796209)
chr3 (66-127)||(27937664-27937725)
chr3 (66-130)||(772893-772956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (143-190)||(211387-211434)
[»] scaffold0013 (1 HSPs)
scaffold0013 (143-189)||(128140-128186)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 160 - 326
Target Start/End: Complemental strand, 7978634 - 7978468
Alignment:
Q  160 attacacgtcccgtacccgtattttgaaatcaggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaagcctgtcaatttaggtttgattcggg 259  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7978634 attacacgtcccgtacccgtattttgaaatcgggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaaacctgtcaatttaggtttgattcggg 7978535  T
Q  260 cggtacccacaggtatgagctttgttgccatgtctaagagatgtataccatatttagaaatcaagtt 326  Q
    ||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7978534 cggtatccacgggtatgaactttgttgccatgtctaagagctgtataccatatttagaaatcaagtt 7978468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 9402514 - 9402578
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| |||||||||||  |||| ||| |||||||| ||| || ||||||||||||||    
T  9402514 tgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttct 9402578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 29199942 - 29199903
Alignment:
Q  151 tatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  29199942 tatatccctgttacccgtcccgtacccgtattttgaaatc 29199903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 34178401 - 34178344
Alignment:
Q  136 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcagg 193  Q
    |||||| ||||||| ||||||| | |||| |||| ||||||||| |||||||||||||    
T  34178401 tttggggtgggtacctatatccttgttacccgtctcgtacccgtgttttgaaatcagg 34178344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 10925602 - 10925550
Alignment:
Q  70 agtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 122  Q
    |||||||| ||||||||||| || || ||| ||||||||||| ||||||||||    
T  10925602 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaatt 10925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 17108301 - 17108363
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  17108301 tgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgatttt 17108363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 29918532 - 29918611
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 147  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||||||||  ||||||||||||| ||||    
T  29918532 tgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattt--tttacatttgggacgggt 29918611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 5793510 - 5793572
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| ||||||||||    
T  5793510 tgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 5793572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 33631899 - 33631821
Alignment:
Q  218 agtcaaagccgaaaaagcctgtcaatttaggtttgattcgggcg-gtacccacaggtatgagctttgttgccatgtcta 295  Q
    ||||||||| | |||| || |||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||||    
T  33631899 agtcaaagcgggaaaaacccgtcaatttagatttggttcgggtgcgtacccacgggtatgggctttgttgccatgtcta 33631821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 17084272 - 17084191
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 147  Q
    |||||| | ||| |||||||| ||  |||||||| ||||||||| ||| |||||||||||||| |||||||| | |||||||    
T  17084272 tgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgatgggt 17084191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 6388668 - 6388604
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| |||||||||||  |||| | | ||||||||| || |||||||||||||||||    
T  6388668 tgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttct 6388604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 15173927 - 15173889
Alignment:
Q  161 ttacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  15173927 ttacccgtcccgtacccgtattttgaaatcgggaaaaac 15173889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 33631971 - 33631909
Alignment:
Q  136 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 198  Q
    |||||| |||||||||||||||| ||||| |||||| ||||| | |||||| |||||| ||||    
T  33631971 tttggggtgggtacttatatccccattactcgtcccatacccatgttttgagatcaggtaaaa 33631909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 36274968 - 36275029
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||||||||||| ||||||||||   |||| ||| ||||||||||||||| ||||||||||||    
T  36274968 tgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgatttt 36275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 30481486 - 30481430
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||| |||||||  ||||| |||| | ||| |||||||||||||||||||||||    
T  30481486 tgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaac 30481430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 30903971 - 30904035
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||| |||||  |||| ||| ||||||||| |  |||||||||||||||||    
T  30903971 tgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttct 30904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 30904064 - 30904116
Alignment:
Q  138 tgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    |||| |||||||||||||| | ||||| |||| ||||||||| ||||||||||    
T  30904064 tggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatc 30904116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 45236088 - 45236144
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||| ||||| || ||||| |||||| ||||||| ||||||||||||| |||||    
T  45236088 tgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaac 45236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 13531875 - 13531939
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  13531875 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttct 13531939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 25210303 - 25210367
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| || ||| |||||||||||||    
T  25210303 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttct 25210367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 34544474 - 34544410
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||||| || |||||||| ||||||||    
T  34544474 tgtgaatgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttct 34544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 17845555 - 17845485
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatt 137  Q
    |||||||||||| ||||||| ||  ||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  17845555 tgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttt-tttacatt 17845485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 44057907 - 44057962
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 198  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||| ||||    
T  44057907 tgggtacatatatccccattacccgtcccgtaccggtattttgaaatcagggaaaa 44057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 29656898 - 29656836
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    ||||||| |||| ||||||||||   |||| ||| ||||||||||||||||||||||||||||    
T  29656898 tgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgatttt 29656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 30696850 - 30696925
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggat 143  Q
    ||||||||| || ||||||||||| | ||| ||| ||||||||| || ||||||||||||||  ||||||||||||||    
T  30696850 tgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattt--tttacatttgggat 30696925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 13954672 - 13954735
Alignment:
Q  67 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  13954672 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 13954735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 14095879 - 14095942
Alignment:
Q  67 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  14095879 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 14095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 43371570 - 43371633
Alignment:
Q  136 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    |||||| ||||||| ||||||||  |||| ||||||||||||||||||| ||||| || |||||    
T  43371570 tttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaac 43371633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 3547190 - 3547246
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||| |||||| |  |||| ||||||||||||||||||||||||| | ||||||    
T  3547190 tgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcggtaaaaac 3547246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 42995773 - 42995821
Alignment:
Q  80 tttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||| |||||    
T  42995773 tttacggtttaagtttttatttatataaaagagataataaattaatttt 42995821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 39422463 - 39422524
Alignment:
Q  235 cctgtcaatttaggtttgattcgggcggt-acccacaggtatgagctttgttgccatgtcta 295  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  39422463 cctgtcaatttgggtgtggttcgggcggttacccacaggtatgagctttgttgccatgtcta 39422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 24207612 - 24207676
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||| |||||||    
T  24207612 tgtgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttct 24207676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 12457442 - 12457506
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||||  |||| |||| ||| ||||| |||||| |||||||||||||||||    
T  12457442 tgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttct 12457506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 16311453 - 16311394
Alignment:
Q  69 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 129  Q
    |||| |||| |||||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttc 16311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 27900565 - 27900503
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    ||||| |||||| ||||||||||| ||||| ||| |||||||||| |  ||||||||||||||    
T  27900565 tgtgactgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgatttt 27900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 35584050 - 35584103
Alignment:
Q  74 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||| ||||||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaaggg-taataaattgatttt 35584103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 38972855 - 38972909
Alignment:
Q  74 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||| ||||||||||| |||||  || |||||||||||| |||||||||||||||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgatttt 38972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 17153094 - 17153158
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||||||||||| |||   ||| ||| ||| || ||||| |||||||||||||||||    
T  17153094 tgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttct 17153158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 130
Target Start/End: Complemental strand, 18452013 - 18451985
Alignment:
Q  102 atataaaagggataataaattgattttct 130  Q
    |||||||||||||||||||||||||||||    
T  18452013 atataaaagggataataaattgattttct 18451985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 11472874 - 11472811
Alignment:
Q  67 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||||||||| |||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttct 11472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 42908107 - 42908050
Alignment:
Q  142 atgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||| || |||||    
T  42908107 atgggtacatatatccccattacccgtcccgtacccgtattttgaaatcggggaaaac 42908050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 10990918 - 10990879
Alignment:
Q  151 tatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10990918 tatatccctattacccgtcccgtacccgtattttgaaatc 10990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 18684010 - 18684058
Alignment:
Q  151 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||||| |||| ||||||||||||||||||||||||| || |||||    
T  18684010 tatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaac 18684058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 37103196 - 37103136
Alignment:
Q  139 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||||| | |||||||   |||| | ||||||||||||||||||||||||||||||||    
T  37103196 gggatgggtgcatatatcctcgttacccttcccgtacccgtattttgaaatcaggaaaaac 37103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 22973416 - 22973463
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||    
T  22973416 tgggtacagatatccccattacccgtcccgtacccgtattttgaaatc 22973463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 32546220 - 32546275
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 198  Q
    ||||||| ||||||||  |||| ||| ||||||||||||||||||||| |||||||    
T  32546220 tgggtacatatatccccgttacccgttccgtacccgtattttgaaatcgggaaaaa 32546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 29014994 - 29014961
Alignment:
Q  166 cgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  29014994 cgtcccgtacccgtattttgaaatcgggaaaaac 29014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 12980405 - 12980461
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||| || |||||    
T  12980405 tgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 12980461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 26622979 - 26623035
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||||||||| || ||||| | |||| ||||||| ||||||||||||| |||||    
T  26622979 tgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaac 26623035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 28309538 - 28309570
Alignment:
Q  161 ttacacgtcccgtacccgtattttgaaatcagg 193  Q
    |||| ||||||||||||||||||||||||||||    
T  28309538 ttacccgtcccgtacccgtattttgaaatcagg 28309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 45380135 - 45380191
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||| ||||| ||  |||| |||||| |||||||||||||||||| ||||||||    
T  45380135 tgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgggaaaaac 45380191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 45065274 - 45065325
Alignment:
Q  139 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  45065274 gggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatc 45065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 33516236 - 33516174
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||| |||||||||    
T  33516236 tgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgatttt 33516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 37384204 - 37384265
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 127  Q
    |||||||||||| ||||||||||| |  || ||| |||||||||||||||||||||||||||    
T  37384204 tgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 8843968 - 8843904
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8843968 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8843904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 8856932 - 8856868
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8856932 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8856868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 9929331 - 9929267
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||||||||||||||||| |||| ||||||||| |||||  ||| | |||||||||||||||||    
T  9929331 tgtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttct 9929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 33616279 - 33616215
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| |||||||||||   ||| ||| |||||||||||| |||||||||||||||||    
T  33616279 tgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttct 33616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 39086087 - 39086150
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| || || ||||||||||||||    
T  39086087 tgtgagtgaaatgatttagggtttaagtttctatttatataaaaagg-tagtaaattgattttct 39086150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 9281040 - 9280989
Alignment:
Q  79 atttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  9281040 atttagggtttgaatttctatctatataaaagggataataaatttattttct 9280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 21544608 - 21544663
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 198  Q
    ||||||| |||||||| |||||  |||||||||||||||||||||||| |||||||    
T  21544608 tgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaa 21544663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 4741366 - 4741318
Alignment:
Q  79 atttagggtttaagtttatatctatataaaagggataataaattgattt 127  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||||||||    
T  4741366 atttagggtttgagtttctatttatataaaatggataataaattgattt 4741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 21714135 - 21714075
Alignment:
Q  70 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 21714075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 36919054 - 36919118
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| |||||| |||| ||||| ||| |||||||||| | ||||||| |||||||||    
T  36919054 tgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttct 36919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 14605991 - 14605944
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  14605991 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 14605944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 21956971 - 21956914
Alignment:
Q  72 tgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||| |||||||||||  |||| ||| |||||||||||| |||||||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttct 21956914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 42907820 - 42907881
Alignment:
Q  68 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||| | || ||||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttct 42907881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 1866607 - 1866559
Alignment:
Q  151 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    |||||||  ||||| |||| |||||||||||||||||||| ||||||||    
T  1866607 tatatccgcattacccgtctcgtacccgtattttgaaatcgggaaaaac 1866559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 9929233 - 9929177
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||| ||||||| | |||| ||| |  |||||||||||||||||||||||||||    
T  9929233 tgggtacctatatccatgttacccgtactatacccgtattttgaaatcaggaaaaac 9929177  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 12075795 - 12075731
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||| ||||||| ||| || |||| ||||| ||| ||||||||| || |||||||||||||||||    
T  12075795 tgtgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttct 12075731  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 25298891 - 25298843
Alignment:
Q  151 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    |||||||| ||||| | |||||||||||| |||||||||| ||||||||    
T  25298891 tatatccccattacccatcccgtacccgtgttttgaaatccggaaaaac 25298843  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 29527841 - 29527897
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    ||||||| ||||||||  |||| |||| |||||||||||||||||||| || |||||    
T  29527841 tgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaac 29527897  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 43553408 - 43553440
Alignment:
Q  97 tatctatataaaagggataataaattgattttc 129  Q
    |||||||||||||||| ||||||||||||||||    
T  43553408 tatctatataaaaggggtaataaattgattttc 43553440  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 50376507 - 50376451
Alignment:
Q  74 aaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||| |||||| |||| ||||| ||| ||||||||| ||| ||||||||||||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttct 50376451  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 16903441 - 16903503
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||| ||  ||||||||||||||    
T  16903441 tgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgatttt 16903503  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 42729107 - 42729043
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| |||||| || ||||||| ||| |||||||||||||| ||||||| |||||||    
T  42729107 tgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttct 42729043  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 25154892 - 25154837
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 198  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||| |||||||    
T  25154892 tgggtacttatatccccattactcgtcccgtactcgtgttttgaaatcgggaaaaa 25154837  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 13692570 - 13692635
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataat-aaattgattttct 130  Q
    |||| ||||||| |||||||||||  |||| ||| ||||||||||||||||| |||||||||||||    
T  13692570 tgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaaattgattttct 13692635  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 36421692 - 36421756
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    ||||| |||||| |||||| |||  ||||| ||| ||||||| ||||||||||||||||||||||    
T  36421692 tgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttct 36421756  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 39219184 - 39219248
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||| ||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  39219184 tgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 39219248  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 43513189 - 43513130
Alignment:
Q  69 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| |  | |||||||||||||    
T  43513189 gagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgatttt 43513130  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 5703332 - 5703275
Alignment:
Q  70 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 128  Q
    |||||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||    
T  5703332 agtgaaatgatttaggatttgagtttatat-tatataaaagatataataaattgatttt 5703275  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 47645019 - 47644966
Alignment:
Q  69 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 122  Q
    ||||||||| ||||||| | | ||||| ||| ||||||||||||||||||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaatt 47644966  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 48576277 - 48576216
Alignment:
Q  70 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctt 131  Q
    |||||||| ||||||||||| || || ||| |||| |||| |||| ||||||||||||||||    
T  48576277 agtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttctt 48576216  T

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Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 70111 - 70173
Alignment:
Q  136 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 198  Q
    |||||| ||||||| |||||||   |||| ||||||||||||||||| |||||||||||||||    
T  70111 tttggggtgggtacatatatcctcgttacccgtcccgtacccgtattatgaaatcaggaaaaa 70173  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 37032259 - 37032197
Alignment:
Q  68 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||| ||||||||||| ||||| ||| ||||||||| || ||||||||| |||||||    
T  37032259 tgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttct 37032197  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 40796209 - 40796147
Alignment:
Q  136 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 199  Q
    |||||| ||||||| | |||||  ||||| ||||||||||||||||||||||||| ||||||||    
T  40796209 tttggggtgggtacatgtatcctcattacccgtcccgtacccgtattttgaaatc-ggaaaaac 40796147  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 27937664 - 27937725
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 127  Q
    |||||||||||| |||||||||||| |||| ||| ||||||||||   ||||||||| ||||    
T  27937664 tgtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaattt 27937725  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 772956 - 772893
Alignment:
Q  66 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 130  Q
    |||||||||||| ||| | ||||| ||||| ||| |||| ||||||| |||||||||||||||||    
T  772956 tgtgagtgaaatgattcaaggtttgagtttctatttatacaaaaggg-taataaattgattttct 772893  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 211387 - 211434
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 190  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  211387 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 211434  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 128186 - 128140
Alignment:
Q  143 tgggtacttatatccctattacacgtcccgtacccgtattttgaaat 189  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||||    
T  128186 tgggtacatatatccccattacccgtcccgtacccgtattatgaaat 128140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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