View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_6 (Length: 732)
Name: NF15465_high_6
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 20 - 716
Target Start/End: Complemental strand, 44056373 - 44055677
Alignment:
| Q |
20 |
gacataacggttttgcgcagcgtaggcagaaaggcagtggctgcagcaattgccggcatggttttgcctttcatccttggcggtgctttcatcttctttt |
119 |
Q |
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| T |
44056373 |
gacataacggttttgcgcagcgtaggcagaaaggcagtggctgcagcaattgccggcatggttttgcctttcatccttggcggtgctttcatcttctttt |
44056274 |
T |
|
| Q |
120 |
tgaaaagagaaagcccctgtgacacgaaccgaggaacttatgttctgttcctcggtgtcgctctttctgtcactgcatttcctgttctagctaggatcct |
219 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44056273 |
tgaaaagagaaagccactgtgacacgaaccgaggaacttatgttctgttcctcggtgtcgctctttctgtcactgcatttcctgttctagctaggatcct |
44056174 |
T |
|
| Q |
220 |
cgccgagctaaaactcatcaacacagatataggaaagcttgctctttcggctgcactcatcagtgatgtgtgtgcttggattctcttggctttagccatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44056173 |
cgccgagctaaaactcatcaacacagatataggaaagcttgctctttcggctgcactcatcagtgatgtgtgtgcttggattctcttggctttagccatt |
44056074 |
T |
|
| Q |
320 |
gcaatggctgagaaccaagcaacttctttcgcttccctttgggttctattgtctgccgcagcgtttgtcgccatttgtatttacgctgttagacccgcag |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44056073 |
gcaatggctgagaaccaagcaacttctttcgcttccctttgggttctattgtctgccgcagcgtttgtcgccatttgtatttacgctgttagacccgcag |
44055974 |
T |
|
| Q |
420 |
cttcatggatagttcggaaaacacctgagggtgaatctttcagtgagttttatatatctcttatattagccggagtcatggtctccggtttcatcactga |
519 |
Q |
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| T |
44055973 |
cttcatggatagttcagaaaacacctgagggtgaatctttcagtgagttttatatatctcttatattagccggagtcatggtctccggtttcatcactga |
44055874 |
T |
|
| Q |
520 |
tgctattggaactcattctgttttcggagcttttgtgttcggtttggcaattccgaatggaccgcttggtgtttctctggtagaaaagcttgaggatttt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44055873 |
tgctattggaactcattctgttttcggagcttttgtgttcggtttggcaattccgaatggaccgcttggtgtttctctggtagaaaagcttgaggatttt |
44055774 |
T |
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| Q |
620 |
gtttcaggacttttgttacctctcttttttgccattagtgggttaaaaaccaatataggactcattaaagggtcttttacctgggttattcttattc |
716 |
Q |
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| T |
44055773 |
gtttcaggacttttgttacctctcttttttgccattagtgggttaaaaaccaatataggactcattaaagggtcttttacttgggttattcttattc |
44055677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 506 - 660
Target Start/End: Complemental strand, 39237759 - 39237605
Alignment:
| Q |
506 |
ggtttcatcactgatgctattggaactcattctgttttcggagcttttgtgttcggtttggcaattccgaatggaccgcttggtgtttctctggtagaaa |
605 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||| | |||||| |||||| || |||| | |||| |
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| T |
39237759 |
ggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaa |
39237660 |
T |
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| Q |
606 |
agcttgaggattttgtttcaggacttttgttacctctcttttttgccattagtgg |
660 |
Q |
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|||||||||| |||||||| ||||||||| | |||||||||||||| |||||||| |
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| T |
39237659 |
agcttgaggactttgtttctggacttttgcttcctctcttttttgcaattagtgg |
39237605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 39238084 - 39237977
Alignment:
| Q |
181 |
tctttctgtcactgcatttcctgttctagctaggatcctcgccgagctaaaactcatcaacacagatataggaaagcttgctctttcggctgcactcatc |
280 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| | || | | |||||||||| |||||||||| |
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| T |
39238084 |
tctttctgttactgcatttcctgttcttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcatt |
39237985 |
T |
|
| Q |
281 |
agtgatgt |
288 |
Q |
| |
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| |||||| |
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| T |
39237984 |
aatgatgt |
39237977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 2811294 - 2811407
Alignment:
| Q |
185 |
tctgtcactgcatttcctgttctagctaggatcctcgccgagctaaaactcatcaacacagatataggaaagcttgctctttcggctgcactcatcagtg |
284 |
Q |
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|||||||| |||||||||| || ||| | || || |||||||| ||||||||||||||||| ||||||||||| | ||||| || | ||||||| || |
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| T |
2811294 |
tctgtcacctcatttcctgtgctcgctcgaatgcttgccgagctcaaactcatcaacacagaactaggaaagctttcactttcaacttccctcatcaatg |
2811393 |
T |
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| Q |
285 |
atgtgtgtgcttgg |
298 |
Q |
| |
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|||||||||||||| |
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| T |
2811394 |
atgtgtgtgcttgg |
2811407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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