View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_61 (Length: 314)
Name: NF15465_high_61
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_61 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold1360 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 6071605 - 6071901
Alignment:
| Q |
18 |
aaatattcaaattgatccaaactgtccacattatcaagtacaatcaaaactttggtacttctcagtcttctcatatgaaatgtagatattacaacatcag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6071605 |
aaatattcaaattgatccaaactgtccacattatcaagtacaatcaaaactttggtacttctcagccttctcatatgaaatgtagatattacaacatcag |
6071704 |
T |
|
| Q |
118 |
atggggaaaattcttcctttagtagctcagagaataacttactgactgaatattcttttgcattagcaaagcaaacttggtcatattgagcaaagtgttt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6071705 |
atggagaaaattcttcctttagtagctcagagaataacttactgactgaatattcttttgcattagcaaagcaaacttggtcatattgagcaaagtgttt |
6071804 |
T |
|
| Q |
218 |
ggcaaacaagactttggcgatggttgtctttcccataccgcccatgccccaaattccaagtatttgaacacttttcaataatgactccacacattca |
314 |
Q |
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| T |
6071805 |
ggcaaacaagactttggcgatggttgtctttcccataccgcccatgccccaaattccaagtatttgaacacttttcaataatgactccacacattca |
6071901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 6195888 - 6196145
Alignment:
| Q |
18 |
aaatattcaaattgatccaaactgtccacattatcaagtacaatcaaaactttggtacttctcagtcttctcatatgaaatgtagatattacaacatcag |
117 |
Q |
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||||||||||| ||||| || ||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||| |||| |||| | || |
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| T |
6195888 |
aaatattcaaactgatctaagctgtccatattatcaagtacaatcaaaacttttctacttctcagcctcctcatatgaaatgcagatcctaca---ttag |
6195984 |
T |
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| Q |
118 |
atggggaaaattcttcctttagtagctcagagaataacttactgactgaatattcttttgcattagcaaagcaaacttggtcatattgagcaaagtgttt |
217 |
Q |
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||||||||| |||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||| || || |||||||| ||||| | || |
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| T |
6195985 |
atggggaaatttcttcctttagtagctcagagaaaagcttactaagtgaatattcttttgcattagcaaagcagacatgatcatattgggcaaacagctt |
6196084 |
T |
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| Q |
218 |
ggcaaacaagactttggcgatggttgtctttcccataccgcccatgccccaaattccaagt |
278 |
Q |
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||||||||||||||| || ||| |||| |||||||| || ||||| ||||||||||||||| |
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| T |
6196085 |
ggcaaacaagactttagcaatgattgtttttcccattccacccataccccaaattccaagt |
6196145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 6062699 - 6062777
Alignment:
| Q |
198 |
tcatattgagcaaagtgtttggcaaacaagactttggcgatggttgtctttcccataccgcccatgccccaaattccaa |
276 |
Q |
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|||||||| |||||||| |||||||||| | |||| |||||||||||||| || || ||||||||||||||||||| |
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| T |
6062699 |
tcatattgtgcaaagtgcttggcaaacatctgtctggctatggttgtctttcctattcctcccatgccccaaattccaa |
6062777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 37451088 - 37450792
Alignment:
| Q |
18 |
aaatattcaaattgatccaaactgtccacattatcaagtacaatcaaaactttggtacttctcagtcttctcatatgaaatgtagatattacaacatcag |
117 |
Q |
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|
||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||||| |||||||||| | |
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| T |
37451088 |
aaataatcaaattgatctgaactttccacattatcaagtacaatcaaaacttttctacttctcagcctcctcatatgaattgtagattttacaacatcgg |
37450989 |
T |
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| Q |
118 |
atggggaaaattcttcctttagtagctcagagaataacttactgactgaatattcttttgcattagcaaagcaaacttggtcatattgagcaaagtgttt |
217 |
Q |
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||| |||| ||||||||||||||||||||||| | | | || | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
37450988 |
atgcagaaatttcttcctttagtagctcagagagaagcctgctaagtgaatattcttttgcattagcaaagcaaacatggtcatattgggcaaagtgttt |
37450889 |
T |
|
| Q |
218 |
ggcaaacaagactttggcgatggttgtctttcccataccgcccatgccccaaattccaagtatttgaacacttttcaataatgactccacacattca |
314 |
Q |
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|||||| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||| ||| |||||| |||||| || || |||||| |
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| T |
37450888 |
ggcaaaaaagactttggcaatggttgtctttcccattccgcccatactccaaattccaagtattcgaaattttttcagtaatgattctacgcattca |
37450792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1360 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1360
Description:
Target: scaffold1360; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 1953 - 1917
Alignment:
| Q |
240 |
gttgtctttcccataccgcccatgccccaaattccaa |
276 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
1953 |
gttgtcttgccaataccgcccatgccccaaattccaa |
1917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 3817730 - 3817766
Alignment:
| Q |
240 |
gttgtctttcccataccgcccatgccccaaattccaa |
276 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
3817730 |
gttgtcttgccaataccgcccatgccccaaattccaa |
3817766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 3919734 - 3919698
Alignment:
| Q |
240 |
gttgtctttcccataccgcccatgccccaaattccaa |
276 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
3919734 |
gttgtcttgccaataccgcccatgccccaaattccaa |
3919698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 3932958 - 3932922
Alignment:
| Q |
240 |
gttgtctttcccataccgcccatgccccaaattccaa |
276 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
3932958 |
gttgtcttgccaataccgcccatgccccaaattccaa |
3932922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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