View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_65 (Length: 295)

Name: NF15465_high_65
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_65
NF15465_high_65
[»] chr3 (1 HSPs)
chr3 (12-295)||(36609933-36610215)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 36609933 - 36610215
Alignment:
Q  12 atgaatatacataaatgatttacaaattatgtaacaaattgggattagacttgagttcagagcacaattatgtgctcacaaacttgcttgaaattgcacc 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  36609933 atgaatatgcataaatgatttacaaattatgtaacaaattgggattagacttgagttgagagcacaattatgtgctcacaaacttgcttgaaattgcact 36610032  T
Q  112 aaagtgaaagctgcaacaaatgaaattgcactaaaaattgggattttcttgttattctttttcattctgttggcacataagcagcgtcttaagattacag 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36610033 aa-gtgaaagctgcaacaaatgaaattgcactaaaaattgggattttcttgttattctttttcattctgttggcacataagcagcgtcttaagattacag 36610131  T
Q  212 aaccttttattgctgcttagactttctctctacttagttgagagattctcaggctgtttgagattattctaacaatgacaataa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36610132 aaccttttattgctgcttagactttctctctacttagttgagagattctcaggctgtttgagatgattctaacaatgacaataa 36610215  T

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