View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_high_70 (Length: 285)
Name: NF15465_high_70
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_70 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 45873028 - 45872774
Alignment:
| Q |
17 |
aacatatgccataaaacaactcctttaaaggtttatactttgtgtgagtggttgtggagcggaagaactagtagatcattaatttgtttctgaggagcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45873028 |
aacatatgccataaaacaactcctttaaaggtctatactttgtgtgagtggttgtggagcggaagaactagtagatcattaatttgtttctgaggtgcaa |
45872929 |
T |
|
| Q |
117 |
cttttttgggagtatacacgcacactattcgacatgggattggtataatttatgttgatatgttgttactatcataccatttccttcaatttggtccgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45872928 |
cttttttgggagtatacacgcacactattcgacatgggattggtataatttatgttgatatgttgttactatcataccatttccttcaatttggtccgtt |
45872829 |
T |
|
| Q |
217 |
ggggggattttctaaaacttttcgatcctttctatcttttaatttggtctgcttgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
45872828 |
ggggggattttctaaaacttttcgatcctttctatc-tttaatctagtctgcttgt |
45872774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 47014243 - 47014415
Alignment:
| Q |
98 |
atttgtttctgaggagcaacttttttgggagtatacacgcacactattcgacatgggattggtataatttatgttgatatgttgttactatcataccatt |
197 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||| |||||| |||| || | ||||||||||| ||||||| ||| ||| || |||| |||||| |
|
|
| T |
47014243 |
atttgtttttgaggtgcaacttttttggaagtatatg-gcacacaattcaacgttggattggtatagtttatgtcgatccgttattgttatccgaccatt |
47014341 |
T |
|
| Q |
198 |
tccttcaatttggtccgttggggggattttctaaaacttttcgatcctttctatcttttaatttggtctgcttgt |
272 |
Q |
| |
|
||| ||||||||||| ||| || ||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
47014342 |
tccgtcaatttggtcagttaggatgatcttctaaaacttttcgattctttctat-gtttaatttggtttgcttgt |
47014415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 21431019 - 21430948
Alignment:
| Q |
192 |
accatttccttcaatttggtccgttggggggattttctaaaacttttcgatcctttctatcttttaatttggt |
264 |
Q |
| |
|
|||||||||| |||||||||| |||||| || |||||||||||||||| |||| || |||| ||||||||||| |
|
|
| T |
21431019 |
accatttcctacaatttggtcagttgggtggtttttctaaaacttttcaatcccttatatc-tttaatttggt |
21430948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University