View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_71 (Length: 284)
Name: NF15465_high_71
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 13871996 - 13872165
Alignment:
| Q |
35 |
atccatcaataacaaacttgaaa----tatatatatttgattaaaggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaag |
130 |
Q |
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| T |
13871996 |
atccattaataacaaacttgaaagaaatatatatatttgattaaaggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaag |
13872095 |
T |
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| Q |
131 |
cttgatatgagtccagataaacttaaataccaaaccttcctaaaagtaactatatgtaaatgaaaatcaa |
200 |
Q |
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| T |
13872096 |
cttgatttgagtccagataaacttaaataccaaaccttcctaaaagtaactatatgtaaatgaaaatcaa |
13872165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 13853140 - 13853267
Alignment:
| Q |
73 |
aaaggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttccta |
172 |
Q |
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| T |
13853140 |
aaaggaagagaatcacgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttccta |
13853239 |
T |
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| Q |
173 |
aaagtaactatatgtaaatgaaaatcaa |
200 |
Q |
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| T |
13853240 |
aaagtaactatatgtaaatgaaaatcaa |
13853267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 13894547 - 13894603
Alignment:
| Q |
72 |
taaaggaagagaatcgcgca----cccatctccatcaaacctgcaaaaaatagaaatg |
125 |
Q |
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| T |
13894547 |
taaaggaagagaatcgcgcacgcacccatctccatcaaacctgc-aaaaatagaaatg |
13894603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 13901733 - 13901761
Alignment:
| Q |
88 |
cgcacccatctccatcaaacctgcaaaaa |
116 |
Q |
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| T |
13901733 |
cgcacccatctccatcaaacctgcaaaaa |
13901761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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