View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_76 (Length: 272)
Name: NF15465_high_76
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_76 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 49021200 - 49020958
Alignment:
| Q |
20 |
aagccctactccaatctactcatgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttgcttaataaataataacatgagaactgg |
119 |
Q |
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| T |
49021200 |
aagccctactccaatctactcatgaagaaaaataggaagatgaaaattttgaatggaaatgagttcagatttgcttaataaataataacatgagaactgg |
49021101 |
T |
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| Q |
120 |
aaaataaactatcatattcaaccactactttattttccacctctcaacctagtagtccaccacacacattcttcaagagaatgaactactatctagagtg |
219 |
Q |
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| T |
49021100 |
aaaataaactatcatattcaaccactactttattttccacctctcaacctagtagtccaccacacacattcttcaagagaatgaactactatctagagtg |
49021001 |
T |
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| Q |
220 |
agtgagtgcaaatatcttctttgaaataaatccagcacctttg |
262 |
Q |
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| T |
49021000 |
agtgagcgcaaatatcttctttgaaataaatccagcacctttg |
49020958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 37464085 - 37463886
Alignment:
| Q |
20 |
aagccctactccaatctactcatgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttgcttaata-aataataacatgagaactg |
118 |
Q |
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| T |
37464085 |
aagccctactccaatctactcatgaagaaaa-taggaagatgaaaattttgaatggaaatcacttcagatttgcttaatagaatagtaacatgataagtg |
37463987 |
T |
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| Q |
119 |
gaaaataaactatcatattcaaccactactttattttccacctctcaacctagtagtccaccacacacattcttcaagagaatgaactactatctagagt |
218 |
Q |
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| T |
37463986 |
gaaaataaactatcatattcaaccaatactttatcttccacctctcaacatagtagtccatcgtacacattcttgaagaaaatgaactgatatccagagt |
37463887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 37583660 - 37583751
Alignment:
| Q |
42 |
tgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttgcttaataaataataacatgag-aactggaaaataaactatcat |
134 |
Q |
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||||||||||||||||||| |||||||||| |||||||||| | ||||||| ||||| | || || ||||| || |||||||||||||||||| |
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| T |
37583660 |
tgaagaaaaataggaagattaaaattttgattggaaatcacatgagatttgtttaat--acaacaatatgagaaagtggaaaataaactatcat |
37583751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 37463867 - 37463824
Alignment:
| Q |
217 |
gtgagtgagtgcaaatatcttctttgaaataaatccagcacctt |
260 |
Q |
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| T |
37463867 |
gtgagtgagcgcaaatatcttctttgaaacaaatccagcacctt |
37463824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 37590047 - 37590104
Alignment:
| Q |
42 |
tgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttgcttaata |
99 |
Q |
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|||| ||| ||| ||||||||||||||||| |||||||||| | |||||| ||||||| |
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| T |
37590047 |
tgaaaaaatatacgaagatgaaaattttgattggaaatcacatgagatttccttaata |
37590104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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