View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_80 (Length: 264)
Name: NF15465_high_80
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 54888804 - 54889021
Alignment:
| Q |
13 |
aatatccatatgtaagtttcaatcatcaaatggtcttgttaaagattccatgttttaaagccaatcaaattagcaaagtaacaaaagaaaataaaaatga |
112 |
Q |
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| T |
54888804 |
aatatccatatgtaagtttcaatcatcaaatggtcttgttaaagattccatgttttaaagtcaatcaaattagcaaagtaacaaaagaaaaaaaaaatga |
54888903 |
T |
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| Q |
113 |
ttgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttcttccgagtc |
212 |
Q |
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| T |
54888904 |
ttgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttcttccgagtc |
54889003 |
T |
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| Q |
213 |
gagcgttcctcatcatta |
230 |
Q |
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| T |
54889004 |
gagcgttcctcatcatta |
54889021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 54894427 - 54894641
Alignment:
| Q |
13 |
aatatccatatgtaagtttcaatcatcaaatggtcttgttaaagattccatgttttaaagccaatcaaattagcaaagtaacaaaagaaaat----aaaa |
108 |
Q |
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| T |
54894427 |
aatatccatatttaagtatcaatcatcaa-tggtctt----aagtttc-atgttttcaagtcaagcaagttagcaaagtaaaaaaaaaaaaacaaaaaaa |
54894520 |
T |
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| Q |
109 |
atgattgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttcttccg |
208 |
Q |
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| T |
54894521 |
aacattgtcatataaactcactgtcaaggccaagcagattaactatagaaacaaattttttatgcaactcgttatcccaaacaaaacgcggcttcttccg |
54894620 |
T |
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| Q |
209 |
agtcgagcgttcctcatcatt |
229 |
Q |
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| T |
54894621 |
agttgagtgttcctcgtcatt |
54894641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 54904937 - 54905086
Alignment:
| Q |
76 |
atcaaattagcaaagtaacaaaagaaaataaaaatgattgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcag |
175 |
Q |
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|||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||||||||| ||| ||||| ||| ||||||||| ||||| |
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| T |
54904937 |
atcaaattagcaaagtaaaaaaa-aaaata----tcattgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaa |
54905031 |
T |
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| Q |
176 |
ttcatcatcccaaactaaacgaggcttcttccgagtcgagcgttcctcatcatta |
230 |
Q |
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|||| |||||||||||||||||||||||| |||||||| | || |||||||||| |
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| T |
54905032 |
ctcatgatcccaaactaaacgaggcttctttcgagtcgaacatttctcatcatta |
54905086 |
T |
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