View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_82 (Length: 253)
Name: NF15465_high_82
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_82 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 45872549 - 45872783
Alignment:
| Q |
14 |
gaagaatgcaaacaattataaccaattattacaaggtaggttaaaagtctacacccaaacagactaaggattacgccaccacatacgataatcgaaagca |
113 |
Q |
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| T |
45872549 |
gaagaatgcaaacaattataaccaattattacaaggtaggctaaaagtctacacccaaacagactaaggattaagccaccacatacgataatcgaaagca |
45872648 |
T |
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| Q |
114 |
aaagtaacattgattgcttttaaccnnnnnnnnngagagcagcttgattatatatgtcagttgttgaaaaaatttcctctatagacttaaaattcctact |
213 |
Q |
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| T |
45872649 |
aaagtaacattgattgcttttaacc-gaaaaaaagagagcagcttaattctatatgtcagttgttgtaaaaa-ttcctctatagacttaaaatttctatt |
45872746 |
T |
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| Q |
214 |
atttctttctttctaaatcacccacaaacaagcagac |
250 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
45872747 |
atttctttctttctaaatcacccaaaaacaagcagac |
45872783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 39297303 - 39297369
Alignment:
| Q |
55 |
taaaagtctacacccaaacagactaa-ggattacgccaccacatacgataatcgaaagcaaaagtaa |
120 |
Q |
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|||||||||| ||||||||| |||| |||||| ||||||||||| ||||||| ||||||||||||| |
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| T |
39297303 |
taaaagtctaaacccaaacatactagtggattaagccaccacatatgataatcaaaagcaaaagtaa |
39297369 |
T |
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