View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_84 (Length: 252)

Name: NF15465_high_84
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_84
NF15465_high_84
[»] chr4 (3 HSPs)
chr4 (1-177)||(49353786-49353961)
chr4 (9-87)||(49342373-49342451)
chr4 (108-177)||(49342440-49342508)
[»] chr5 (1 HSPs)
chr5 (9-88)||(32782387-32782466)
[»] chr7 (3 HSPs)
chr7 (11-82)||(29594110-29594181)
chr7 (9-85)||(29752189-29752265)
chr7 (9-81)||(29601033-29601105)
[»] chr1 (1 HSPs)
chr1 (11-85)||(35159312-35159386)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 49353786 - 49353961
Alignment:
Q  1 taattgtggattgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaacaagtgaatgnnnnnnnnnn 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  49353786 taattgtagattgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaacaagtgaatg-tttttttct 49353884  T
Q  101 naaggagtcaaacaagtgaacgttgaataagacagaattcgaaaattaaaaggaatttacaaatatcacaatcaagg 177  Q
     ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  49353885 taaggagtcaaacaagtgaaggttgaataagacagaattccaaaatttaaaggaatttacaaatatcacaatcaagg 49353961  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 49342373 - 49342451
Alignment:
Q  9 gattgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaacaagtga 87  Q
    ||||||||||||||| |||||||||||| ||| | ||| |||| |||||||||||||||||||||||||||| ||||||    
T  49342373 gattgtccagaattaggtagaagataccggccaggagttggacgtgattggcacaagatatcacacatcaaagaagtga 49342451  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 49342440 - 49342508
Alignment:
Q  108 tcaaacaagtgaacgttgaataagacagaattcgaaaattaaaaggaatttacaaatatcacaatcaagg 177  Q
    ||||| |||||| ||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  49342440 tcaaagaagtgatcgttgaatc-gacggaattcgaaaattaaaaggaatttacagatatcacaatcaagg 49342508  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 32782466 - 32782387
Alignment:
Q  9 gattgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaacaagtgaa 88  Q
    |||||||| ||||||||||||||||||||| | | ||| |||| ||||||||||||||||||||||||||||||||||||    
T  32782466 gattgtcctgaattatgtagaagataccaggcaggagttggacgtgattggcacaagatatcacacatcaaacaagtgaa 32782387  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 29594181 - 29594110
Alignment:
Q  11 ttgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaaca 82  Q
    |||||| ||||||||||||||||||||||| || || ||||||||||||| |||||||||||||||||||||    
T  29594181 ttgtcctgaattatgtagaagataccagccagaggtaggacatgattggcccaagatatcacacatcaaaca 29594110  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 29752189 - 29752265
Alignment:
Q  9 gattgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaacaagt 85  Q
    |||||||| |||||||||| ||||||||||||  | || ||||||||||||| |||||| |||||||||||||||||    
T  29752189 gattgtcctgaattatgtaaaagataccagccaaaggtaggacatgattggcccaagatttcacacatcaaacaagt 29752265  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 29601105 - 29601033
Alignment:
Q  9 gattgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaac 81  Q
    |||||||| |||||||||| ||||||||||||  | || ||||||||||||| |||||| |||||||||||||    
T  29601105 gattgtcctgaattatgtaaaagataccagccaaaggtaggacatgattggcccaagatttcacacatcaaac 29601033  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 35159312 - 35159386
Alignment:
Q  11 ttgtccagaattatgtagaagataccagcctgaagtcggacatgattggcacaagatatcacacatcaaacaagt 85  Q
    |||||| ||||| |||||||||||| |  |  |||| ||||| ||||||| ||||||||||||||||||||||||    
T  35159312 ttgtcctgaattgtgtagaagatacgaaacaaaagttggacaggattggcccaagatatcacacatcaaacaagt 35159386  T

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