View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_88 (Length: 246)
Name: NF15465_high_88
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_88 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 37853604 - 37853778
Alignment:
| Q |
57 |
tcaaacccttcagattcccaagatttactccgcgaatgtgctcttcatgttcaagtaacctacgcacattcttcaattttcactctcactcttatccctt |
156 |
Q |
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| T |
37853604 |
tcaaacccttcagattcccaagatttactccgcgaatgtgctcttcatgttcaagtaacctacgcacattcttcaattttcactctcactcttat-cctt |
37853702 |
T |
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| Q |
157 |
acaaaatcaatttattcatttttcaattttcattcttaacagaacacagtggaacaaattgtttccgaattctctg |
232 |
Q |
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| T |
37853703 |
acaaagtcaatttattcatttttcaattttcattcttaacagaacacagtggaacaaattgtttccgaattctctg |
37853778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37853554 - 37853589
Alignment:
| Q |
1 |
ctttcagtcgaatttcacagattcacaaattcatcc |
36 |
Q |
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| T |
37853554 |
ctttcagtcgaatttcacagattcacaaattcatcc |
37853589 |
T |
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