View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_89 (Length: 244)

Name: NF15465_high_89
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_89
NF15465_high_89
[»] scaffold0330 (3 HSPs)
scaffold0330 (130-228)||(18467-18565)
scaffold0330 (1-89)||(18122-18207)
scaffold0330 (108-151)||(18268-18311)
[»] scaffold0240 (4 HSPs)
scaffold0240 (130-228)||(2485-2583)
scaffold0240 (1-89)||(2140-2225)
scaffold0240 (182-228)||(15374-15420)
scaffold0240 (108-151)||(2286-2329)


Alignment Details
Target: scaffold0330 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 18467 - 18565
Alignment:
Q  130 aaaagtaacagcgaagatttccctacattagtttgcacggacctggccgctagaggtaaaactgctcgtatggatgcaaaagggaaaataacgagttta 228  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  18467 aaaagaaacaacgaagatttcccaacattagtttgcacggacctggccgctagaggtaaaactgcacgtatggatgcaaaagggaaaataacaagttta 18565  T

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Target: scaffold0330; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 18122 - 18207
Alignment:
Q  1 tattgaagaaaataatatatccacaatgaattacaaaagcaagaagtaagaggtagctatggaaacaattgatgtggatcacttcattg 89  Q
    ||||||||||||| ||||||||||  ||||||||||| ||||||||||||  ||||||||| | |||||||||||||||||||| ||||    
T  18122 tattgaagaaaattatatatccaccgtgaattacaaa-gcaagaagtaag--gtagctatgcatacaattgatgtggatcactttattg 18207  T

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Target: scaffold0330; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 18268 - 18311
Alignment:
Q  108 ggttgaaaatcacaacaagttcaaaagtaacagcgaagatttcc 151  Q
    ||||||||||| ||||||||||||||||| || |||||||||||    
T  18268 ggttgaaaatctcaacaagttcaaaagtagcaacgaagatttcc 18311  T

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Target: scaffold0240 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 2485 - 2583
Alignment:
Q  130 aaaagtaacagcgaagatttccctacattagtttgcacggacctggccgctagaggtaaaactgctcgtatggatgcaaaagggaaaataacgagttta 228  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  2485 aaaagaaacaacgaagatttcccaacattagtttgcacggacctggccgctagaggtaaaactgcacgtatggatgcaaaagggaaaataacaagttta 2583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2140 - 2225
Alignment:
Q  1 tattgaagaaaataatatatccacaatgaattacaaaagcaagaagtaagaggtagctatggaaacaattgatgtggatcacttcattg 89  Q
    ||||||||||||| ||||||||||  ||||||||||| ||||||||||||  ||||||||| | |||||||||||||||||||| ||||    
T  2140 tattgaagaaaattatatatccaccgtgaattacaaa-gcaagaagtaag--gtagctatgcatacaattgatgtggatcactttattg 2225  T

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Target: scaffold0240; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 15374 - 15420
Alignment:
Q  182 gaggtaaaactgctcgtatggatgcaaaagggaaaataacgagttta 228  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||    
T  15374 gaggtaaaactacacgtatggatgcaaaagggaaaataacaagttta 15420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 2286 - 2329
Alignment:
Q  108 ggttgaaaatcacaacaagttcaaaagtaacagcgaagatttcc 151  Q
    ||||||||||| ||||||||||||||||| || |||||||||||    
T  2286 ggttgaaaatctcaacaagttcaaaagtagcaacgaagatttcc 2329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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