View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_high_9 (Length: 667)

Name: NF15465_high_9
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_high_9
NF15465_high_9
[»] chr5 (5 HSPs)
chr5 (19-302)||(30440514-30440797)
chr5 (306-505)||(30440958-30441166)
chr5 (19-196)||(37719392-37719578)
chr5 (582-661)||(30440798-30440877)
chr5 (586-658)||(37719588-37719660)
[»] chr1 (7 HSPs)
chr1 (19-257)||(16960962-16961210)
chr1 (19-257)||(25868699-25868947)
chr1 (362-415)||(16961515-16961568)
chr1 (362-415)||(25867475-25867528)
chr1 (586-658)||(16961220-16961292)
chr1 (586-658)||(25868617-25868689)
chr1 (260-301)||(26496286-26496327)
[»] chr6 (4 HSPs)
chr6 (19-257)||(4435501-4435749)
chr6 (127-257)||(4091840-4091970)
chr6 (362-415)||(4091541-4091594)
chr6 (586-658)||(4435419-4435491)
[»] chr3 (2 HSPs)
chr3 (19-257)||(46595089-46595337)
chr3 (586-658)||(46595347-46595419)
[»] chr4 (2 HSPs)
chr4 (118-257)||(47521093-47521232)
chr4 (362-415)||(47520945-47520998)
[»] chr8 (1 HSPs)
chr8 (19-257)||(38016402-38016643)
[»] scaffold0007 (1 HSPs)
scaffold0007 (36-83)||(81770-81817)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 30440797 - 30440514
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  30440797 atcaaatccagatctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaattccattttcccaggtatt 30440698  T
Q  119 caatttgttgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtactttgt 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30440697 caatttgttgtatgctaatttgtgaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtattttgt 30440598  T
Q  219 tgttttattgaacaaacaatggtgtttttgagaataaaactgattacatctagtcttattctaggttttcactataacattggt 302  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  30440597 tgttttattgaacaaacaatggtgttttttagaataaaacttattacatctggtctttttctaggttttcactataacattggt 30440514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 306 - 505
Target Start/End: Complemental strand, 30441166 - 30440958
Alignment:
Q  306 gcaaagctgtaaacgtgcgtatattttccatgcacatttatatggttgtgcaactgtgtgt---ataaagcagttcccatgtaaagttaaaagtaacatt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  30441166 gcaaagctgtaaacgtgcgtatattttccatgcacatttatatggttgtgcaactgtgtgtataataaagcagttcccatgtaaagttaaaagtaacatt 30441067  T
Q  403 gtaaatgacaaatgttccaatgc------aaatnnnnnnncgctcaatgcctctcaacattgtaaatgacaaatatttcacacgctcaatgcctcttaac 496  Q
    |||||||||||||||||||||||      |||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30441066 gtaaatgacaaatgttccaatgcaaaaaaaaaaaaaaaaacgctcaatgcctcttaacattgtaaatgacaaatatttcacacgctcaatgcctcttaac 30440967  T
Q  497 aacaaaaaa 505  Q
    || ||||||    
T  30440966 aaaaaaaaa 30440958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 37719578 - 37719392
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  37719578 atcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacc-atgaaaaaacattgattttgctgacctaatttcatttctccaggtatt 37719480  T
Q  119 ----------caatttgttgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaa 196  Q
              |||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37719479 caatctatcccaatctgatgtatgctaatttgctaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaa 37719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 582 - 661
Target Start/End: Complemental strand, 30440877 - 30440798
Alignment:
Q  582 atcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatatcac 661  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||| ||||    
T  30440877 atcgtcattgcctctagctccagccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcatctcac 30440798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 37719660 - 37719588
Alignment:
Q  586 tcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatat 658  Q
    |||||| ||| |||||| |||| ||||| ||||||||||| ||||  |||||||||| |||||||||||||||    
T  37719660 tcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcatat 37719588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 3e-93; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 16961210 - 16960962
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16961210 atcaaatccagatctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtatt 16961111  T
Q  119 caatttgt----------tgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattt 208  Q
    |||| | |          |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  16961110 caatctatcacaatctgatgtatgctaatttgttaattttagaattaaatatttgggtttatttatgtttatttaatttaacgttaaattaagtgaattt 16961011  T
Q  209 tgtactttgttgttttattgaacaaacaatggtgtttttgagaataaaa 257  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  16961010 tgtattttgttgttatattgaacaaacaatggtatttttgagaataaaa 16960962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 25868699 - 25868947
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    |||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25868699 atcaaatccagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttatccaggtatt 25868798  T
Q  119 caatttgt----------tgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattt 208  Q
    |||| | |          ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25868799 caatctatcccaatctgatgtatgctaatttattaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattt 25868898  T
Q  209 tgtactttgttgttttattgaacaaacaatggtgtttttgagaataaaa 257  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  25868899 tgtattttgttgttatattgaacaaacaatggtatttttgagaataaaa 25868947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 16961568 - 16961515
Alignment:
Q  362 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16961568 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 16961515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 25867475 - 25867528
Alignment:
Q  362 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 415  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25867475 tgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaat 25867528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 16961292 - 16961220
Alignment:
Q  586 tcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatat 658  Q
    |||||| ||| |||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  16961292 tcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcatat 16961220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 25868617 - 25868689
Alignment:
Q  586 tcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatat 658  Q
    |||||| ||| |||||| |||||||||||||||||||||| ||||  ||||||||||  ||||||||||||||    
T  25868617 tcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcatat 25868689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 26496286 - 26496327
Alignment:
Q  260 gattacatctagtcttattctaggttttcactataacattgg 301  Q
    |||||||| | ||||||||||||||||||||||||| |||||    
T  26496286 gattacatttggtcttattctaggttttcactataaaattgg 26496327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 7e-91; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 4435501 - 4435749
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4435501 atcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtatt 4435600  T
Q  119 caatttgt----------tgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattt 208  Q
    |||| | |          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4435601 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattt 4435700  T
Q  209 tgtactttgttgttttattgaacaaacaatggtgtttttgagaataaaa 257  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  4435701 tgtattttgttgttatattgaacaaacaatggtatttttgagaataaaa 4435749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 4091840 - 4091970
Alignment:
Q  127 tgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtactttgttgttttat 226  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  4091840 tgtatgctaatttgttaatttcagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtattttgttgttatat 4091939  T
Q  227 tgaacaaacaatggtgtttttgagaataaaa 257  Q
    ||||||||||||||| |||||||||||||||    
T  4091940 tgaacaaacaatggtatttttgagaataaaa 4091970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 4091541 - 4091594
Alignment:
Q  362 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 415  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4091541 tgtgtataaagcagttcccatgtaaagttaaaaataacattgtaaatgacaaat 4091594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 4435419 - 4435491
Alignment:
Q  586 tcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatat 658  Q
    |||||| ||| |||||| |||||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  4435419 tcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatat 4435491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 7e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 46595337 - 46595089
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  46595337 atcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtatt 46595238  T
Q  119 caatttgt----------tgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattt 208  Q
    |||| | |          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46595237 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattt 46595138  T
Q  209 tgtactttgttgttttattgaacaaacaatggtgtttttgagaataaaa 257  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  46595137 tgtattttgttgttatattgaacaaacaatggtatttttgagaataaaa 46595089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 46595419 - 46595347
Alignment:
Q  586 tcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatat 658  Q
    |||||| ||| |||||| |||||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  46595419 tcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatat 46595347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 118 - 257
Target Start/End: Original strand, 47521093 - 47521232
Alignment:
Q  118 tcaatttgttgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtactttg 217  Q
    ||||| || ||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  47521093 tcaatctgatgtatgctaatttgttaattttagaatcaaatatatgggtttatatatgttcatttgatttaacgttaaattaagtgaattttgtattttg 47521192  T
Q  218 ttgttttattgaacaaacaatggtgtttttgagaataaaa 257  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  47521193 ttgttatattgaacaaacaatggtatttttgagaataaaa 47521232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 47520945 - 47520998
Alignment:
Q  362 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 415  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47520945 tgtgtataaagcagttccgatgtaaagttaaaagtaacattgtaaatgacaaat 47520998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 38016643 - 38016402
Alignment:
Q  19 atcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgctgacctaattccatttttccaggtatt 118  Q
    ||||||| ||||||| |||||| ||| ||||| ||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||    
T  38016643 atcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaattccatttctccaggtatt 38016544  T
Q  119 ----------caatttgttgtatgctaatttgttaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattt 208  Q
              |||| |||| ||||||||||||||| ||||| |||||||||| ||||||| |||       || || ||||||||||||||  | |||||    
T  38016543 caatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgttt-------ttaga-ttaacgttaaattacattaattt 38016452  T
Q  209 tgtactttgttgttt-tattgaacaaacaatggtgtttttgagaataaaa 257  Q
    |||| ||||| |||| |||||  |||||||||||| ||||||||||||||    
T  38016451 tgtattttgtggtttgtattgggcaaacaatggtgattttgagaataaaa 38016402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 81817 - 81770
Alignment:
Q  36 aaatcctctacatctcgatttgttggttttaacccatgaaaatacatt 83  Q
    ||||| ||||||||||||| ||||||||| |||||||||||| |||||    
T  81817 aaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 81770  T

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