View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_93 (Length: 241)
Name: NF15465_high_93
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_93 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 15847655 - 15847770
Alignment:
| Q |
11 |
cacagatgattattgttgttcctgtaggaaacacaaacacctccattttagagtgactaagtttttcctcaacatgaaaatatgagaaattgtgaagcat |
110 |
Q |
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| T |
15847655 |
cacagatgattattgttgttcctgtgggaaacacaaacacctccattttagagtgac-aagtttttgctcaacatgaaaatatgagaaattgtgaagcat |
15847753 |
T |
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| Q |
111 |
caaaatagatctttatc |
127 |
Q |
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| T |
15847754 |
caaaatagatctttatc |
15847770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 15862153 - 15862199
Alignment:
| Q |
14 |
agatgattattgttgttcctgtaggaaacacaaacacctccatttta |
60 |
Q |
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| T |
15862153 |
agatgattattgttgttcctgtgggaaacacaaacacctccatttta |
15862199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 15854712 - 15854759
Alignment:
| Q |
14 |
agatgattattgttgttcctgtaggaaacacaaacacctccattttag |
61 |
Q |
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| T |
15854712 |
agatgattattgttgttgttgtgggaaacacaaacacctccattttag |
15854759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 15868798 - 15868840
Alignment:
| Q |
14 |
agatgattattgttgttcctgtaggaaacacaaacacctccat |
56 |
Q |
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| T |
15868798 |
agatgattattgttgttcctgtgggaaacataaacacttccat |
15868840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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